Basic Information:

  VIRBase ID:  

VHID00617709

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Heatr5a:  NM_177171     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Heatr5a
miRBase Accession/Entrez ID	MIMAT0005552	320487
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	C230081H03Rik//D930036F22Rik//mKIAA1316

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Heatr5a	chr12:51876644-51876645(-) m6A 3'UTR       24981863 chr12:51876685-51876686(-) m6A 3'UTR       24981863 chr12:51876795-51876796(-) m6A 3'UTR       25683224//24981863//25456834 chr12:51876847-51876848(-) m6A 3'UTR       25683224//25456834//25569111 chr12:51876853-51876854(-) m6A 3'UTR       25683224//25456834//25569111 chr12:51876919-51876920(-) m6A 3'UTR       25683224//24981863//25456834//25569111 chr12:51876948-51876949(-) m6A 3'UTR       25683224//24981863//25456834//25569111 chr12:51877121-51877122(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr12:51877129-51877130(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr12:51877178-51877179(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr12:51877184-51877185(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr12:51877239-51877240(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr12:51877250-51877251(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr12:51877325-51877326(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:51877345-51877346(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:51877357-51877358(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:51888055-51888056(-) m6A CDS       25683224//25569111 chr12:51888078-51888079(-) m6A CDS       25683224//25569111 chr12:51888125-51888126(-) m6A CDS       25683224//24981863//25569111 chr12:51888130-51888131(-) m6A CDS       25683224//24981863//25569111 chr12:51888142-51888143(-) m6A CDS       25683224//24981863//25569111 chr12:51888166-51888167(-) m6A CDS       25683224//24981863//25569111 chr12:51888205-51888206(-) m6A CDS       25683224//24981863//25569111 chr12:51888215-51888216(-) m6A CDS       25683224//24981863//25569111 chr12:51888243-51888244(-) m6A CDS       25683224//24981863//25569111 chr12:51888884-51888885(-) m6A CDS       25683224//22608085 chr12:51925279-51925280(-) m6A CDS       25683224 chr12:51939620-51939621(-) m6A CDS       25683224//22608085 chr12:51939639-51939640(-) m6A CDS       25683224//22608085 chr12:51958995-51958996(-) m6A CDS       25683224 chr12:51959008-51959009(-) m6A CDS       25683224 chr12:51959039-51959040(-) m6A CDS       25683224//25412662 chr12:51961436-51961437(-) m6A CDS       25683224//25412662 chr12:51961591-51961592(-) m6A 5'UTR       25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Heatr5a	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Heatr5a

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar