Detail Information

Basic Information:


  VIRBase ID:  

VHID00617658

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:           Lhfpl4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m88-1-3p Lhfpl4
miRBase
Accession/Entrez ID		 MIMAT0005552 269788
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 1190004M23Rik//AI604880//B230384L07//mKIAA4027

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Lhfpl4
chr6:113132482(-) A-I      intronic
chr6:113139690(-) A-I      intronic
chr6:113131921(-) A-I      intronic
chr6:113131952(-) A-I      intronic
chr6:113131927(-) A-I      intronic
chr6:113131953(-) A-I      intronic
chr6:113139683(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Lhfpl4
chr6:113181927(-) A-I intron -    22524474
chr6:113181933(-) A-I intron -    22524474
chr6:113181958(-) A-I intron -    22524474
chr6:113181959(-) A-I intron -    22524474
chr6:113182488(-) A-I intron -    22524474
chr6:113189689(-) A-I intron -    22524474
chr6:113189696(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Lhfpl4
chr6:113168272-113168273(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113168296-113168297(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113168344-113168345(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113168427-113168428(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113168441-113168442(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113168469-113168470(-) m6A 3'UTR       25683224//22608085
chr6:113168625-113168626(-) m6A 3'UTR       25683224//22608085
chr6:113168641-113168642(-) m6A 3'UTR       25683224//22608085
chr6:113168669-113168670(-) m6A 3'UTR       25683224//22608085
chr6:113168866-113168867(-) m6A 3'UTR       25683224//22608085
chr6:113168917-113168918(-) m6A 3'UTR       25683224//22608085
chr6:113168960-113168961(-) m6A 3'UTR       25683224//22608085
chr6:113168988-113168989(-) m6A 3'UTR       25683224//22608085
chr6:113169025-113169026(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113169243-113169244(-) m6A 3'UTR       25683224//22608085
chr6:113169261-113169262(-) m6A 3'UTR       25683224//24981863
chr6:113169315-113169316(-) m6A 3'UTR       25683224//24981863
chr6:113169352-113169353(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113169459-113169460(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113169503-113169504(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113169543-113169544(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113169682-113169683(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113169783-113169784(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113169848-113169849(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113169859-113169860(-) m6A 3'UTR       25683224//24981863
chr6:113169970-113169971(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113170069-113170070(-) m6A 3'UTR       25683224//22608085
chr6:113170128-113170129(-) m6A 3'UTR       25683224//22608085
chr6:113170281-113170282(-) m6A 3'UTR       25683224//22608085
chr6:113170298-113170299(-) m6A 3'UTR       25683224//22608085
chr6:113170914-113170915(-) m6A 3'UTR       25683224//24981863
chr6:113170933-113170934(-) m6A 3'UTR       25683224//24981863
chr6:113170971-113170972(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113170990-113170991(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113171034-113171035(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113171091-113171092(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113171217-113171218(-) m6A 3'UTR       25683224//24981863//22608085
chr6:113171434-113171435(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr6:113171466-113171467(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr6:113171529-113171530(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr6:113171590-113171591(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr6:113171648-113171649(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr6:113171744-113171745(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr6:113171759-113171760(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr6:113171772-113171773(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr6:113171863-113171864(-) m6A CDS       25683224//25456834//24981863//22608085
chr6:113176432-113176433(-) m6A CDS//intron       25683224//25456834//24981863//22608085
chr6:113176450-113176451(-) m6A CDS       25683224//25456834//24981863//22608085
chr6:113176458-113176459(-) m6A CDS       25683224//25456834//24981863//22608085
chr6:113176480-113176481(-) m6A CDS       25683224//25456834//24981863//22608085
chr6:113176579-113176580(-) m6A CDS       25683224//25456834//24981863//22608085
chr6:113176601-113176602(-) m6A CDS       25683224//25456834//24981863//22608085
chr6:113176618-113176619(-) m6A CDS       25683224//25456834//24981863//22608085
chr6:113176628-113176629(-) m6A CDS       25683224//25456834//24981863//22608085
chr6:113194170-113194171(-) m6A CDS       25683224//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Lhfpl4
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m88-1-3p
Interactor2: Lhfpl4

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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