Detail Information

Basic Information:


  VIRBase ID:  

VHID00617537

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:           Zfp799:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m88-1-3p Zfp799
miRBase
Accession/Entrez ID		 MIMAT0005552 240064
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 6030490I01Rik

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Zfp799
chr17:32956178(-) A-I      3'UTR
chr17:32956131(-) A-I      3'UTR
chr17:32956134(-) A-I      3'UTR
chr17:32956169(-) A-I      3'UTR
chr17:32956127(-) A-I      3'UTR
chr17:32956163(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Zfp799
chr17:32819182(-) A-I exon 3'UTR    22524474
chr17:32819186(-) A-I exon 3'UTR    22524474
chr17:32819189(-) A-I exon 3'UTR    22524474
chr17:32819218(-) A-I exon 3'UTR    22524474
chr17:32819224(-) A-I exon 3'UTR    22524474
chr17:32819233(-) A-I exon 3'UTR    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Zfp799
chr17:32818701-32818702(-) m6A 3'UTR       25456834//24981863
chr17:32818719-32818720(-) m6A 3'UTR       25456834//24981863
chr17:32818833-32818834(-) m6A 3'UTR       25456834//24981863//25569111
chr17:32818849-32818850(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr17:32818862-32818863(-) m6A 3'UTR       25456834//24981863//22608085
chr17:32818897-32818898(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr17:32818944-32818945(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr17:32818962-32818963(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr17:32819024-32819025(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr17:32819244-32819245(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr17:32819256-32819257(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr17:32819285-32819286(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr17:32819316-32819317(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr17:32819332-32819333(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr17:32819361-32819362(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32819390-32819391(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32819400-32819401(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32819457-32819458(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32819514-32819515(-) m6A CDS       25456834//24981863//25569111
chr17:32819541-32819542(-) m6A CDS       24981863//25569111
chr17:32819652-32819653(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32819709-32819710(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32819730-32819731(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32819794-32819795(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32819820-32819821(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32819877-32819878(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32819894-32819895(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32819946-32819947(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32819961-32819962(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32820045-32820046(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32820062-32820063(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32820084-32820085(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32820101-32820102(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32820129-32820130(-) m6A CDS       25456834//24981863//25569111//22608085
chr17:32820236-32820237(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32820308-32820309(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32820318-32820319(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32820375-32820376(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32820515-32820516(-) m6A CDS       24981863//25569111
chr17:32820714-32820715(-) m6A CDS       25683224//24981863//25456834
chr17:32820785-32820786(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32820792-32820793(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32820812-32820813(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:32820850-32820851(-) m6A 3'UTR//CDS       25456834//24981863//25569111//22608085
chr17:32820867-32820868(-) m6A 3'UTR//CDS       25456834//24981863//25569111//22608085
chr17:32820906-32820907(-) m6A 3'UTR//CDS       25456834//24981863//25569111//22608085
chr17:32820912-32820913(-) m6A 3'UTR//CDS       25456834//24981863//25569111//22608085
chr17:32821031-32821032(-) m6A 3'UTR//CDS       25456834//24981863//25569111//22608085
chr17:32821080-32821081(-) m6A 3'UTR//CDS       25456834//24981863//25569111
chr17:32821120-32821121(-) m6A CDS//intron       25456834//24981863
chr17:32821470-32821471(-) m6A 3'UTR//intron       25456834
chr17:32822148-32822149(-) m6A CDS       25683224//24981863//25569111
chr17:32822168-32822169(-) m6A CDS       25683224//24981863//25569111
chr17:32830107-32830108(-) m6A 5'UTR       25683224//24981863//25456834//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Zfp799
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m88-1-3p
Interactor2: Zfp799

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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