Detail Information

Basic Information:


  VIRBase ID:  

VHID00617364

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:           Ino80d:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m88-1-3p Ino80d
miRBase
Accession/Entrez ID		 MIMAT0005552 227195
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 7330405I11//A430093A21Rik//BC010584

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Ino80d
chr1:63106248(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Ino80d
chr1:63059674(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Ino80d
chr1:63048094-63048095(-) m6A 3'UTR//intron       25683224
chr1:63048130-63048131(-) m6A 3'UTR//intron       25683224
chr1:63048142-63048143(-) m6A 3'UTR//intron       25683224
chr1:63048330-63048331(-) m6A 3'UTR//intron       24981863//25456834
chr1:63048393-63048394(-) m6A 3'UTR//intron       24981863//25456834
chr1:63048414-63048415(-) m6A 3'UTR//intron       24981863//25456834//25569111
chr1:63048428-63048429(-) m6A 3'UTR//intron       24981863//25456834//25569111
chr1:63048438-63048439(-) m6A 3'UTR//intron       24981863//25569111
chr1:63048462-63048463(-) m6A 3'UTR//intron       24981863//25569111
chr1:63048507-63048508(-) m6A 3'UTR//intron       24981863
chr1:63048513-63048514(-) m6A 3'UTR//intron       24981863
chr1:63050389-63050390(-) m6A 3'UTR//intron       25683224//24981863
chr1:63050411-63050412(-) m6A 3'UTR//intron       25683224//24981863
chr1:63050641-63050642(-) m6A 3'UTR//intron       25683224//25569111
chr1:63050708-63050709(-) m6A 3'UTR//intron       25683224//24981863//25569111
chr1:63050737-63050738(-) m6A 3'UTR//intron       25683224//24981863//25569111
chr1:63050923-63050924(-) m6A 3'UTR//intron       24981863//25569111
chr1:63050928-63050929(-) m6A 3'UTR//intron       25683224//24981863//25569111
chr1:63050984-63050985(-) m6A 3'UTR//intron       25683224//24981863//25569111
chr1:63050997-63050998(-) m6A 3'UTR//intron       25683224//24981863//25569111//22608085
chr1:63051068-63051069(-) m6A 3'UTR//intron       25683224//24981863//25569111
chr1:63051136-63051137(-) m6A 3'UTR//intron       25683224//24981863//25569111
chr1:63051243-63051244(-) m6A 3'UTR//intron       24981863//25569111
chr1:63051443-63051444(-) m6A 3'UTR//intron       24981863
chr1:63051489-63051490(-) m6A 3'UTR//intron       24981863
chr1:63051569-63051570(-) m6A 3'UTR//intron       24981863
chr1:63052636-63052637(-) m6A 3'UTR//intron       24981863//25569111
chr1:63052715-63052716(-) m6A 3'UTR//intron       24981863//25569111
chr1:63052731-63052732(-) m6A 3'UTR//intron       24981863//25569111
chr1:63052960-63052961(-) m6A 3'UTR//intron       24981863
chr1:63055123-63055124(-) m6A 3'UTR//intron       25683224//22608085
chr1:63055765-63055766(-) m6A 3'UTR//intron       25683224
chr1:63055824-63055825(-) m6A 3'UTR//intron       25683224
chr1:63055846-63055847(-) m6A 3'UTR//intron       25683224
chr1:63056030-63056031(-) m6A 3'UTR//intron       25683224
chr1:63056049-63056050(-) m6A 3'UTR//intron       25683224
chr1:63056058-63056059(-) m6A 3'UTR//intron       25683224
chr1:63056688-63056689(-) m6A 3'UTR//intron       25683224
chr1:63056725-63056726(-) m6A 3'UTR//intron       25683224
chr1:63056830-63056831(-) m6A 3'UTR//intron       25683224
chr1:63056874-63056875(-) m6A 3'UTR//intron       25683224//22608085
chr1:63056926-63056927(-) m6A 3'UTR//intron       25683224//22608085
chr1:63056936-63056937(-) m6A 3'UTR//intron       25683224//22608085
chr1:63057035-63057036(-) m6A 3'UTR//intron       25683224//22608085
chr1:63057090-63057091(-) m6A 3'UTR//intron       25569111
chr1:63057439-63057440(-) m6A 3'UTR//intron       25683224
chr1:63057494-63057495(-) m6A 3'UTR//intron       25683224//25569111
chr1:63057524-63057525(-) m6A 3'UTR//intron       25683224//25569111
chr1:63057549-63057550(-) m6A 3'UTR//intron       25683224//25569111
chr1:63057832-63057833(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr1:63057868-63057869(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr1:63057954-63057955(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr1:63058091-63058092(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63058183-63058184(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:63058215-63058216(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:63058281-63058282(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:63058333-63058334(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:63058404-63058405(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:63058717-63058718(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr1:63058862-63058863(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63058928-63058929(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63058934-63058935(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63059132-63059133(-) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085
chr1:63060196-63060197(-) m6A exon//intron       25683224//25456834//25569111
chr1:63061004-63061005(-) m6A exon//intron       25683224//25569111
chr1:63061014-63061015(-) m6A exon//intron       25683224//25569111
chr1:63061056-63061057(-) m6A CDS//exon       25683224//25569111
chr1:63061098-63061099(-) m6A CDS//exon       25683224//25412662//25569111
chr1:63061107-63061108(-) m6A CDS//exon       25683224//25412662//25569111
chr1:63061112-63061113(-) m6A CDS//exon       25683224//25412662//25569111
chr1:63061222-63061223(-) m6A exon//intron       25683224//25412662//22608085
chr1:63062086-63062087(-) m6A CDS//exon       25683224//25569111
chr1:63062133-63062134(-) m6A CDS//exon       25683224//24981863//25569111
chr1:63062147-63062148(-) m1A CDS//exon       26863196
chr1:63062157-63062158(-) m6A CDS//exon       25683224//24981863//25569111
chr1:63062196-63062197(-) m6A CDS//exon       25683224//24981863
chr1:63065718-63065719(-) m6A CDS       25683224
chr1:63065775-63065776(-) m6A CDS       25683224
chr1:63065824-63065825(-) m6A CDS       25683224
chr1:63068196-63068197(-) m6A CDS       25683224//22608085
chr1:63068229-63068230(-) m6A CDS       25683224//22608085
chr1:63068243-63068244(-) m6A CDS       25683224//22608085
chr1:63068282-63068283(-) m6A CDS       25683224//22608085
chr1:63074350-63074351(-) m6A CDS       25683224//22608085
chr1:63074380-63074381(-) m6A CDS       25683224//22608085
chr1:63078957-63078958(-) m6A CDS       25683224//22608085
chr1:63078966-63078967(-) m6A CDS       25683224//22608085
chr1:63078974-63078975(-) m6A CDS       25683224
chr1:63085684-63085685(-) m6A CDS       25683224//25456834//24981863//25569111
chr1:63085716-63085717(-) m6A CDS       25683224//25456834//24981863//25569111
chr1:63085725-63085726(-) m6A CDS       25683224//25456834//24981863//25569111
chr1:63085793-63085794(-) m6A CDS       25683224//25456834//24981863//25569111
chr1:63085921-63085922(-) m6A CDS       25683224//25456834//24981863//25569111
chr1:63085971-63085972(-) m6A CDS       25683224//25456834//24981863//25569111
chr1:63086066-63086067(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63086086-63086087(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63086170-63086171(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63086185-63086186(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63086241-63086242(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63086336-63086337(-) m6A 5'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:63093369-63093370(-) m6A 5'UTR//CDS       25683224//24981863
chr1:63093374-63093375(-) m6A 5'UTR//CDS       25683224//24981863
chr1:63093388-63093389(-) m6A 5'UTR//CDS       25683224//24981863
chr1:63093433-63093434(-) m6A 5'UTR//CDS       25683224
chr1:63093487-63093488(-) m6A 5'UTR//CDS//intron       25683224
chr1:63105683-63105684(-) m6A 5'UTR//intron       25569111
chr1:63114521-63114522(-) m6A 5'UTR       25683224//25456834//24981863//25569111//22608085
chr1:63114531-63114532(-) m6A 5'UTR       25683224//25456834//24981863//25569111//22608085

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m88-1-3p
Interactor2: Ino80d

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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