Detail Information

Basic Information:


  VIRBase ID:  

VHID00617357

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:           Wdr26:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m88-1-3p Wdr26
miRBase
Accession/Entrez ID		 MIMAT0005552 226757
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 1600024A01Rik//AA693241//AI447817//AU044014//C77982//Gid//Gid7

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Wdr26
chr1:181175303-181175304(-) m6A 3'UTR       26404942//22608085
chr1:181176016-181176017(-) m6A 3'UTR       24981863//22608085
chr1:181176739-181176740(-) m6A 3'UTR       22608085
chr1:181176753-181176754(-) m6A 3'UTR       22608085
chr1:181176792-181176793(-) m6A 3'UTR       22608085
chr1:181176910-181176911(-) m6A 3'UTR       24981863
chr1:181176967-181176968(-) m6A 3'UTR       24981863
chr1:181176982-181176983(-) m6A 3'UTR       24981863
chr1:181176999-181177000(-) m6A 3'UTR       24981863
chr1:181177061-181177062(-) m6A 3'UTR       24981863
chr1:181177073-181177074(-) m6A 3'UTR       24981863
chr1:181177234-181177235(-) m6A 3'UTR       25569111
chr1:181177242-181177243(-) m6A 3'UTR       25569111
chr1:181177364-181177365(-) m6A 3'UTR       24981863//25569111
chr1:181177428-181177429(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr1:181177480-181177481(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr1:181177524-181177525(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr1:181177553-181177554(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr1:181177589-181177590(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr1:181177647-181177648(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr1:181177674-181177675(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr1:181177709-181177710(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr1:181177730-181177731(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr1:181180434-181180435(-) m6A 3'UTR//intron       25456834//24981863//25569111//22608085//22575960
chr1:181180640-181180641(-) m6A CDS//intron       24981863//25569111
chr1:181181320-181181321(-) m6A 3'UTR//CDS       24981863//25569111
chr1:181181337-181181338(-) m6A 3'UTR//CDS       24981863//25569111
chr1:181181398-181181399(-) m6A 3'UTR//CDS       -
chr1:181181454-181181455(-) m6A 3'UTR//CDS       22608085
chr1:181182791-181182792(-) m6A 3'UTR//CDS//exon       22608085
chr1:181182872-181182873(-) m6A 3'UTR//CDS//exon       25569111//22608085
chr1:181182881-181182882(-) m6A 3'UTR//CDS//exon       25569111//22608085
chr1:181184253-181184254(-) m6A 3'UTR//CDS//exon       25569111//22608085
chr1:181184268-181184269(-) m6A 3'UTR//CDS//exon       25569111//22608085
chr1:181184320-181184321(-) m6A 3'UTR//CDS//exon       22608085
chr1:181184373-181184374(-) m6A 3'UTR//CDS//exon       22608085
chr1:181186026-181186027(-) m6A 3'UTR//CDS       22608085
chr1:181186051-181186052(-) m6A 3'UTR//CDS       22608085
chr1:181187422-181187423(-) m6A exon//intron       22608085
chr1:181187432-181187433(-) m6A exon//intron       22608085
chr1:181187707-181187708(-) m6A 3'UTR//CDS//exon       22608085
chr1:181187728-181187729(-) m6A 3'UTR//CDS//exon       22608085
chr1:181211148-181211149(-) m1A CDS       26863196
chr1:181211312-181211313(-) m6A CDS       25412662//24981863//25569111
chr1:181211379-181211380(-) m6A CDS       25412662//24981863//25569111
chr1:181211503-181211504(-) m6A 5'UTR       25412662//24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Wdr26
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m88-1-3p
Interactor2: Wdr26

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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