Basic Information:

  VIRBase ID:  

VHID00617254

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Nhsl1:  NM_173390     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Nhsl1
miRBase Accession/Entrez ID	MIMAT0005552	215819
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	5730409E15Rik//A630035H13Rik//A730096F01//BC013565//D10Bwg0940e//mKIAA1357

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Nhsl1	chr10:18319153-18319154(+) m6A CDS       25569111 chr10:18407760-18407761(+) m6A 5'UTR//exon//intron       24981863//25569111 chr10:18407773-18407774(+) m6A 5'UTR//exon//intron       24981863//25569111 chr10:18407809-18407810(+) m6A 5'UTR//exon//intron       24981863//25569111 chr10:18407816-18407817(+) m6A 5'UTR//exon//intron       24981863 chr10:18419602-18419603(+) m6A exon//intron       25456834 chr10:18419695-18419696(+) m6A exon//intron       25456834 chr10:18524225-18524226(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr10:18524415-18524416(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr10:18524423-18524424(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr10:18524431-18524432(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr10:18524463-18524464(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr10:18524471-18524472(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr10:18524636-18524637(+) m6A CDS       25683224//25569111 chr10:18524678-18524679(+) m6A CDS       25683224//24981863//25569111 chr10:18524744-18524745(+) m6A CDS       25683224//25456834//24981863//25569111 chr10:18524782-18524783(+) m6A CDS       25683224//25456834//24981863//25569111 chr10:18524876-18524877(+) m6A CDS       25683224//25456834//24981863//25569111 chr10:18524881-18524882(+) m6A CDS       25683224//25456834//24981863//25569111 chr10:18524921-18524922(+) m6A CDS       25683224//25456834//24981863//25569111 chr10:18524960-18524961(+) m6A CDS       25683224//25456834//24981863//25569111 chr10:18524990-18524991(+) m6A CDS       25683224//25456834//24981863//25569111 chr10:18525083-18525084(+) m6A CDS       25683224//24981863//25456834//25569111 chr10:18525108-18525109(+) m6A CDS       25683224//24981863//25456834//25569111 chr10:18525130-18525131(+) m6A CDS       25683224//24981863//25569111 chr10:18525161-18525162(+) m6A CDS       25683224//24981863//25569111 chr10:18525169-18525170(+) m6A CDS       25683224//24981863//25569111 chr10:18525288-18525289(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr10:18525431-18525432(+) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr10:18525482-18525483(+) m6A CDS       25683224//25412662//24981863//25456834//25569111 chr10:18525597-18525598(+) m6A CDS       25683224//24981863//25569111 chr10:18525844-18525845(+) m6A CDS       25683224 chr10:18525855-18525856(+) m6A CDS       25683224//24981863 chr10:18525932-18525933(+) m6A CDS       25683224//25569111 chr10:18526155-18526156(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr10:18526178-18526179(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr10:18526185-18526186(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr10:18526199-18526200(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr10:18526217-18526218(+) m6A CDS       25683224//25456834//24981863//25569111 chr10:18526349-18526350(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr10:18526380-18526381(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr10:18526395-18526396(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr10:18526402-18526403(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr10:18526621-18526622(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:18526637-18526638(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:18526683-18526684(+) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr10:18526881-18526882(+) m6A CDS       24981863//25569111//22608085 chr10:18526888-18526889(+) m6A CDS       24981863//25569111//22608085 chr10:18526985-18526986(+) m6A CDS       25683224//24981863//25569111 chr10:18527548-18527549(+) m6A CDS       25683224//25569111 chr10:18527574-18527575(+) m6A CDS       25683224//25569111 chr10:18527629-18527630(+) m6A CDS       25683224//25412662//25569111 chr10:18527636-18527637(+) m6A CDS       25683224//25412662//25569111 chr10:18527646-18527647(+) m6A CDS       25683224//25412662//25569111 chr10:18531296-18531297(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr10:18531473-18531474(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:18531518-18531519(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:18531557-18531558(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:18531566-18531567(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:18531596-18531597(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:18531725-18531726(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:18531774-18531775(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:18531791-18531792(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:18531839-18531840(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:18531863-18531864(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:18531960-18531961(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:18532062-18532063(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr10:18532114-18532115(+) m6A 3'UTR       25683224//24981863//25569111 chr10:18532340-18532341(+) m6A 3'UTR       25683224//24981863 chr10:18532401-18532402(+) m6A 3'UTR       25683224//24981863 chr10:18532437-18532438(+) m6A 3'UTR       25683224//24981863 chr10:18533492-18533493(+) m6A 3'UTR       25456834//24981863//25569111 chr10:18533506-18533507(+) m6A 3'UTR       25456834//24981863//25569111//22608085 chr10:18533554-18533555(+) m6A 3'UTR       25456834//24981863//25569111//22608085

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Nhsl1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar