Detail Information

Basic Information:


  VIRBase ID:  

VHID00617245

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:           Chtf8:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m88-1-3p Chtf8
miRBase
Accession/Entrez ID		 MIMAT0005552 214987
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 5830457O10Rik//Ctf8//Derpc

RNA Editing:


Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Chtf8
chr8:106885604(-) C-I exon 3'UTR    22448268

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Chtf8
chr8:106884041-106884042(-) m6A 3'UTR       25456834//25412662//24981863//25569111
chr8:106884047-106884048(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106884055-106884056(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106884115-106884116(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106884127-106884128(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106884175-106884176(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106884190-106884191(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106884208-106884209(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106884228-106884229(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106884251-106884252(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106884385-106884386(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr8:106884398-106884399(-) m6A 3'UTR       25683224//25456834//24981863//25569111
chr8:106884511-106884512(-) m6A 3'UTR       25456834//24981863//25569111
chr8:106884571-106884572(-) m6A 3'UTR       25456834//24981863//25569111
chr8:106884598-106884599(-) m6A 3'UTR       24981863//25569111
chr8:106884816-106884817(-) m6A 3'UTR//CDS       22608085
chr8:106884870-106884871(-) m6A 3'UTR//CDS       22608085
chr8:106884880-106884881(-) m6A 3'UTR//CDS       22608085
chr8:106885178-106885179(-) m6A 3'UTR//CDS       24981863//25569111//22608085
chr8:106885183-106885184(-) m6A 3'UTR//CDS       24981863//25569111//22608085
chr8:106885197-106885198(-) m6A 3'UTR//CDS       24981863//25569111//22608085
chr8:106885243-106885244(-) m6A 3'UTR//CDS       25569111//22608085
chr8:106885324-106885325(-) m6A 3'UTR//CDS       25569111//22608085
chr8:106885346-106885347(-) m6A 3'UTR//CDS       25569111//22608085
chr8:106885388-106885389(-) m6A 3'UTR//CDS       25569111
chr8:106885400-106885401(-) m6A 3'UTR//CDS       25569111
chr8:106885434-106885435(-) m6A 3'UTR//CDS       24981863//25569111
chr8:106885486-106885487(-) m6A 3'UTR//CDS       25569111
chr8:106885544-106885545(-) m6A 3'UTR//CDS       25569111//22608085
chr8:106885600-106885601(-) m6A 3'UTR//CDS       25569111//22608085
chr8:106885670-106885671(-) m6A 3'UTR//CDS       24981863//25456834//25569111
chr8:106885708-106885709(-) m6A 3'UTR//CDS       24981863//25456834//25569111
chr8:106885749-106885750(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111
chr8:106885783-106885784(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25412662//25569111//22608085
chr8:106885840-106885841(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106885873-106885874(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106885932-106885933(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106885940-106885941(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106885951-106885952(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106885957-106885958(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106885963-106885964(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106886078-106886079(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886141-106886142(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886183-106886184(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886259-106886260(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886296-106886297(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886345-106886346(-) m6A 5'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886362-106886363(-) m6A 5'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886399-106886400(-) m6A 5'UTR//CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960
chr8:106886422-106886423(-) m6A 5'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886442-106886443(-) m6A 5'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886463-106886464(-) m6A 5'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr8:106886480-106886481(-) m6A 5'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr8:106886938-106886939(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111
chr8:106886950-106886951(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m88-1-3p
Interactor2: Chtf8

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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