Basic Information:

  VIRBase ID:  

VHID00617243

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Csnk1g1:  NM_173185     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Csnk1g1
miRBase Accession/Entrez ID	MIMAT0005552	214897
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	9130020E21Rik

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Csnk1g1	chr9:65861668(+) A-I      intronic chr9:65874248(+) A-I      intronic chr9:65865495(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Csnk1g1	chr9:66013861(+) A-I intron -    22524474 chr9:66017688(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Csnk1g1	chr9:65908967-65908968(+) m6A 5'UTR       24981863 chr9:65909125-65909126(+) m6A 5'UTR//exon       25412662//24981863//25569111 chr9:65909145-65909146(+) m6A 5'UTR//exon       25412662//25569111 chr9:65909449-65909450(+) m6A 5'UTR//intron       25412662//25569111 chr9:65958363-65958364(+) m6A 5'UTR//exon       25683224//25456834//24981863 chr9:65958381-65958382(+) m6A 5'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr9:65958411-65958412(+) m6A 5'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr9:65958439-65958440(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr9:65958469-65958470(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr9:65958524-65958525(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr9:65958538-65958539(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr9:65958544-65958545(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr9:65958572-65958573(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr9:65958579-65958580(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr9:65958588-65958589(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr9:65958620-65958621(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr9:65958662-65958663(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr9:65958700-65958701(+) m6A CDS//exon       25683224//25456834//24981863 chr9:65999425-65999426(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr9:65999458-65999459(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr9:65999481-65999482(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr9:66002099-66002100(+) m6A 3'UTR//CDS//exon       24981863//25569111 chr9:66002107-66002108(+) m6A 3'UTR//CDS//exon       24981863//25569111 chr9:66002168-66002169(+) m6A 3'UTR//CDS//exon       25412662//24981863//25569111 chr9:66002196-66002197(+) m6A 3'UTR//CDS//exon       25412662//24981863//25569111 chr9:66002204-66002205(+) m6A 3'UTR//CDS//exon       25412662//24981863//25569111 chr9:66002241-66002242(+) m6A 3'UTR//CDS//exon       25412662//24981863//25569111 chr9:66036075-66036076(+) m6A exon//intron       25412662 chr9:66039610-66039611(+) m6A CDS//exon//intron       25683224//25412662//25569111 chr9:66039664-66039665(+) m6A 3'UTR//exon//intron       25683224//25412662//24981863//25569111 chr9:66039714-66039715(+) m6A 3'UTR//exon//intron       25683224//25412662//24981863//25569111 chr9:66039744-66039745(+) m6A 3'UTR//exon//intron       25683224//25456834//25412662//24981863//25569111 chr9:66039759-66039760(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111 chr9:66039932-66039933(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr9:66039940-66039941(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr9:66040010-66040011(+) m6A 3'UTR//intron       25456834//24981863//25569111//22608085 chr9:66040090-66040091(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr9:66040244-66040245(+) m6A 3'UTR//intron       - chr9:66040371-66040372(+) m6A 3'UTR//intron       25683224//25569111 chr9:66040422-66040423(+) m6A 3'UTR//intron       25683224//24981863//25569111 chr9:66040540-66040541(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111 chr9:66040593-66040594(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111 chr9:66040633-66040634(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111 chr9:66040707-66040708(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr9:66040771-66040772(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr9:66040817-66040818(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:66040860-66040861(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:66040903-66040904(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:66040920-66040921(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:66040948-66040949(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:66041056-66041057(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr9:66041081-66041082(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr9:66041202-66041203(+) m6A 3'UTR//intron       25683224//24981863//25456834//25569111 chr9:66041233-66041234(+) m6A 3'UTR//intron       25683224//24981863//25569111 chr9:66041241-66041242(+) m6A 3'UTR//intron       24981863//25569111 chr9:66041247-66041248(+) m6A 3'UTR//intron       24981863//25569111 chr9:66041256-66041257(+) m6A 3'UTR//intron       24981863//25569111 chr9:66041543-66041544(+) m6A 3'UTR//intron       24981863 chr9:66041548-66041549(+) m6A 3'UTR//intron       24981863 chr9:66041564-66041565(+) m6A 3'UTR//intron       24981863 chr9:66041634-66041635(+) m6A 3'UTR//intron       24981863 chr9:66041667-66041668(+) m6A 3'UTR//intron       24981863 chr9:66042293-66042294(+) m6A 3'UTR//intron       24981863 chr9:66042309-66042310(+) m6A 3'UTR//intron       24981863 chr9:66044788-66044789(+) m6A 3'UTR       25683224//24981863//25569111 chr9:66044798-66044799(+) m6A 3'UTR       25683224//24981863//25569111 chr9:66044813-66044814(+) m6A 3'UTR       25683224//24981863//25569111 chr9:66044829-66044830(+) m6A 3'UTR       25683224//24981863//25569111 chr9:66044850-66044851(+) m6A 3'UTR       25683224//24981863//25569111 chr9:66044954-66044955(+) m6A 3'UTR       24981863

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Csnk1g1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar