Basic Information:

  VIRBase ID:  

VHID00617225

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Fbxo42:  NM_172518     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Fbxo42
miRBase Accession/Entrez ID	MIMAT0005552	213499
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	6720460I06Rik//mKIAA1332

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Fbxo42	chr4:140748549(+) A-I      intronic chr4:140714731(+) A-I      intronic chr4:140747818(+) A-I      intronic chr4:140747826(+) A-I      intronic chr4:140748555(+) A-I      intronic chr4:140747832(+) A-I      intronic chr4:140748547(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Fbxo42	chr4:141158816(+) A-I intron -    22524474 chr4:141191903(+) A-I intron -    22524474 chr4:141191911(+) A-I intron -    22524474 chr4:141191917(+) A-I intron -    22524474 chr4:141192632(+) A-I intron -    22524474 chr4:141192634(+) A-I intron -    22524474 chr4:141192640(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Fbxo42	chr4:141148151-141148152(+) m6A 5'UTR//exon       25683224//25412662//24981863//25569111//22608085 chr4:141167743-141167744(+) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr4:141167773-141167774(+) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr4:141167784-141167785(+) m6A CDS//intron       25683224//24981863//25569111//22608085 chr4:141167799-141167800(+) m6A CDS//intron       25683224//24981863//25569111//22608085 chr4:141167818-141167819(+) m6A CDS//intron       25683224//25569111//22608085 chr4:141167847-141167848(+) m6A CDS//intron       25683224//22608085 chr4:141167852-141167853(+) m6A CDS//intron       25683224//22608085 chr4:141197505-141197506(+) m6A CDS       25683224 chr4:141197535-141197536(+) m6A CDS       25683224 chr4:141199005-141199006(+) m6A CDS       25683224//25412662//24981863//25569111 chr4:141199453-141199454(+) m6A CDS       25683224//25412662//24981863//25569111 chr4:141199515-141199516(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:141199565-141199566(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:141199637-141199638(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:141199664-141199665(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:141199751-141199752(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:141199779-141199780(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:141199846-141199847(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:141199890-141199891(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141199923-141199924(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141199965-141199966(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141199973-141199974(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141199993-141199994(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200005-141200006(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200201-141200202(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:141200224-141200225(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:141200308-141200309(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr4:141200328-141200329(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200335-141200336(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200358-141200359(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200367-141200368(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200435-141200436(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200496-141200497(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200528-141200529(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200621-141200622(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200629-141200630(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200635-141200636(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr4:141200645-141200646(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:141200663-141200664(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:141200669-141200670(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:141200856-141200857(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:141200876-141200877(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:141201010-141201011(+) m6A 3'UTR       25412662//24981863//25569111 chr4:141201044-141201045(+) m6A 3'UTR       24981863//25569111 chr4:141201123-141201124(+) m6A 3'UTR       24981863//25569111 chr4:141201156-141201157(+) m6A 3'UTR       24981863//25569111 chr4:141201446-141201447(+) m6A 3'UTR       24981863 chr4:141201454-141201455(+) m6A 3'UTR       24981863 chr4:141201536-141201537(+) m6A 3'UTR       24981863//25569111 chr4:141201585-141201586(+) m6A 3'UTR       24981863//25569111 chr4:141202057-141202058(+) m6A 3'UTR       24981863 chr4:141202072-141202073(+) m6A 3'UTR       24981863 chr4:141202267-141202268(+) m6A 3'UTR       22608085 chr4:141202403-141202404(+) m6A 3'UTR       25683224//24981863//25569111 chr4:141202467-141202468(+) m6A 3'UTR       25683224//24981863//25569111 chr4:141202523-141202524(+) m6A 3'UTR       25683224//24981863 chr4:141202538-141202539(+) m6A 3'UTR       25683224//24981863 chr4:141203315-141203316(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr4:141203390-141203391(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:141203403-141203404(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:141203425-141203426(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:141203484-141203485(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Fbxo42

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar