Basic Information:

  VIRBase ID:  

VHID00616998

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Fancm:  NM_001364447     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Fancm
miRBase Accession/Entrez ID	MIMAT0005552	104806
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	AI427100//C730036B14Rik//D12Ertd364//D12Ertd364e

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Fancm	chr12:66215401(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Fancm	chr12:65075625-65075626(+) m6A 5'UTR       25412662//24981863//25569111 chr12:65075769-65075770(+) m6A CDS       25412662//24981863//25569111 chr12:65075958-65075959(+) m6A CDS       25412662//24981863//25569111 chr12:65076020-65076021(+) m6A CDS       25412662//24981863//25569111 chr12:65102707-65102708(+) m6A CDS       22608085 chr12:65105056-65105057(+) m6A CDS       22608085 chr12:65105164-65105165(+) m6A CDS       25683224//25456834//24981863//25569111 chr12:65105233-65105234(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65105252-65105253(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65105278-65105279(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65105306-65105307(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65105368-65105369(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65105400-65105401(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65105483-65105484(+) m6A CDS       25456834//24981863//25569111 chr12:65105719-65105720(+) m6A CDS       25683224//25456834//24981863//25569111 chr12:65105727-65105728(+) m6A CDS       25683224//25456834//24981863//25569111 chr12:65105797-65105798(+) m6A CDS       25683224//25456834//24981863//25569111 chr12:65105809-65105810(+) m6A CDS       25683224//25456834//24981863//25569111 chr12:65105853-65105854(+) m6A CDS       25683224//25456834//24981863 chr12:65106221-65106222(+) m6A CDS       25683224//25456834//24981863//25569111 chr12:65106271-65106272(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106295-65106296(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106303-65106304(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106358-65106359(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106374-65106375(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106382-65106383(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106405-65106406(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106488-65106489(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106602-65106603(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106630-65106631(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106725-65106726(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr12:65106746-65106747(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106753-65106754(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106778-65106779(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106801-65106802(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106808-65106809(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65106839-65106840(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr12:65113777-65113778(+) m6A CDS       25456834//24981863//25569111 chr12:65113820-65113821(+) m6A CDS       24981863 chr12:65113828-65113829(+) m6A CDS       24981863 chr12:65113965-65113966(+) m6A CDS       24981863 chr12:65114002-65114003(+) m6A CDS       24981863 chr12:65116447-65116448(+) m6A CDS       25412662//22608085 chr12:65118338-65118339(+) m6A CDS       25412662//22608085 chr12:65118415-65118416(+) m6A CDS       22608085 chr12:65120569-65120570(+) m6A CDS       - chr12:65121560-65121561(+) m6A CDS       24981863 chr12:65121662-65121663(+) m6A CDS       25456834//25412662//24981863//25569111//22608085 chr12:65121676-65121677(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65121699-65121700(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65121707-65121708(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65121714-65121715(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65121719-65121720(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65121788-65121789(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65121800-65121801(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65121807-65121808(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr12:65121942-65121943(+) m6A CDS       25412662//24981863//25569111 chr12:65121982-65121983(+) m6A CDS       24981863//25569111 chr12:65122070-65122071(+) m6A CDS       25569111 chr12:65124884-65124885(+) m6A CDS       24981863//25569111 chr12:65124899-65124900(+) m6A CDS       24981863//25569111 chr12:65124916-65124917(+) m6A CDS       24981863//25569111 chr12:65124937-65124938(+) m6A CDS       24981863//25569111 chr12:65124984-65124985(+) m6A CDS       24981863//25569111 chr12:65126608-65126609(+) m6A CDS       24981863 chr12:65126618-65126619(+) m6A CDS       24981863 chr12:65126653-65126654(+) m6A CDS       24981863 chr12:65130394-65130395(+) m6A CDS       25683224//24981863//25456834 chr12:65130400-65130401(+) m6A CDS       25683224//24981863//25456834 chr12:65130439-65130440(+) m6A CDS       25683224//24981863//25456834//22608085 chr12:65130554-65130555(+) m6A 3'UTR       25683224//25456834 chr12:65130606-65130607(+) m6A 3'UTR       25456834 chr12:65130614-65130615(+) m6A 3'UTR       25456834 chr12:65130777-65130778(+) m6A 3'UTR       25569111//22608085 chr12:65130988-65130989(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr12:65131072-65131073(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr12:65131079-65131080(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr12:65131096-65131097(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr12:65131178-65131179(+) m6A 3'UTR       25683224//25456834//24981863//22608085 chr12:65131282-65131283(+) m6A 3'UTR       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Fancm	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Fancm

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar