Detail Information

Basic Information:


  VIRBase ID:  

VHID00616907

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:           Glce:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m88-1-3p Glce
miRBase
Accession/Entrez ID		 MIMAT0005552 93683
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 1110017N23Rik//AI747411//C130034A12Rik//Hs//Hsepi

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Glce
chr9:62057889-62057890(-) m6A 3'UTR       25683224//24981863
chr9:62057914-62057915(-) m6A 3'UTR       25683224//24981863
chr9:62057926-62057927(-) m6A 3'UTR       25683224//24981863
chr9:62057945-62057946(-) m6A 3'UTR       25683224//24981863//22608085
chr9:62058009-62058010(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr9:62058405-62058406(-) m6A 3'UTR       25569111
chr9:62058425-62058426(-) m6A 3'UTR       25569111
chr9:62058457-62058458(-) m6A 3'UTR       24981863//25569111
chr9:62058490-62058491(-) m6A 3'UTR       24981863//25569111
chr9:62058612-62058613(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62058618-62058619(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62058633-62058634(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62058643-62058644(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62058689-62058690(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62058809-62058810(-) m6A 3'UTR       25456834//24981863
chr9:62058844-62058845(-) m6A 3'UTR       25456834
chr9:62058933-62058934(-) m6A 3'UTR       25683224//25456834//22608085
chr9:62059010-62059011(-) m6A 3'UTR       25683224//22608085
chr9:62059370-62059371(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62059397-62059398(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62059451-62059452(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62059466-62059467(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62059575-62059576(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62059688-62059689(-) m6A 3'UTR       25456834//24981863//25569111
chr9:62059793-62059794(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr9:62059799-62059800(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr9:62059865-62059866(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr9:62059888-62059889(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr9:62060001-62060002(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr9:62060134-62060135(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr9:62060192-62060193(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr9:62060279-62060280(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr9:62060291-62060292(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr9:62060385-62060386(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr9:62060476-62060477(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr9:62060550-62060551(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr9:62060620-62060621(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr9:62060689-62060690(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr9:62060806-62060807(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr9:62060831-62060832(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr9:62060857-62060858(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr9:62060863-62060864(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr9:62060887-62060888(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr9:62060930-62060931(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr9:62060992-62060993(-) m6A CDS//exon       25456834//24981863//25569111//22608085
chr9:62061001-62061002(-) m6A CDS//exon       25456834//24981863//25569111//22608085
chr9:62061032-62061033(-) m6A CDS//exon       25456834//24981863//25569111//22608085
chr9:62068400-62068401(-) m6A CDS//exon       25456834//24981863//25569111//22608085
chr9:62068425-62068426(-) m6A CDS//exon       25456834//24981863//25569111//22608085
chr9:62068462-62068463(-) m6A CDS//exon       25456834//24981863//25569111
chr9:62068475-62068476(-) m6A CDS//exon       25456834//24981863//25569111
chr9:62068482-62068483(-) m6A CDS//exon       25456834//24981863//25569111
chr9:62068488-62068489(-) m6A CDS//exon       25456834//24981863//25569111
chr9:62068494-62068495(-) m6A CDS//exon       25456834//24981863//25569111
chr9:62068504-62068505(-) m6A CDS//exon       25456834//24981863//25569111
chr9:62068529-62068530(-) m6A CDS//exon       25456834//24981863//25569111
chr9:62070360-62070361(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr9:62070390-62070391(-) m6A CDS//exon       25456834//24981863//25569111//22608085
chr9:62070566-62070567(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr9:62088504-62088505(-) m6A 5'UTR//exon//intron       25412662//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Glce
Cytoplasm Neuroblastoma cell line (N2A)     22406755
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m88-1-3p
Interactor2: Glce

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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