Basic Information:

  VIRBase ID:  

VHID00616890

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Sf3b1:  NM_031179     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Sf3b1
miRBase Accession/Entrez ID	MIMAT0005552	81898
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	155kDa//2810001M05Rik//AA409119//Pr//Prp10//SAP//SAP155//SF3b15//SF3b155//TA-8//Tar//Targ4

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Sf3b1	chr1:54985988-54985989(-) m6A 3'UTR//exon       24981863//22608085 chr1:54986018-54986019(-) m6A 3'UTR//exon       24981863 chr1:54986067-54986068(-) m6A 3'UTR//exon       24981863 chr1:54987150-54987151(-) m6A 3'UTR//exon       25569111 chr1:54987176-54987177(-) m6A 3'UTR//exon       25569111 chr1:54987266-54987267(-) m6A 3'UTR//exon       24981863//25569111 chr1:54987275-54987276(-) m6A 3'UTR//exon       24981863//25569111 chr1:54987299-54987300(-) m6A 3'UTR//exon       24981863//25569111 chr1:54987351-54987352(-) m6A CDS//exon       24981863//25569111//26404942 chr1:54987370-54987371(-) m6A CDS//exon       24981863//25569111//26404942 chr1:54987968-54987969(-) m6A CDS//exon       24981863 chr1:54988030-54988031(-) m6A CDS//exon       24981863 chr1:54988056-54988057(-) m6A CDS//exon       24981863 chr1:54988139-54988140(-) m6A CDS//exon       24981863 chr1:54988152-54988153(-) m6A CDS//exon       24981863 chr1:54988977-54988978(-) m6A exon//intron       24981863 chr1:54995422-54995423(-) m6A CDS       22608085 chr1:54995442-54995443(-) m6A CDS       22608085 chr1:54996922-54996923(-) m6A CDS       25412662//22608085 chr1:54997022-54997023(-) m6A CDS       25412662//22608085 chr1:54997040-54997041(-) m6A CDS       25412662//22608085 chr1:54997134-54997135(-) m6A CDS       25412662//22608085 chr1:54998045-54998046(-) m6A CDS       25412662 chr1:54998049-54998050(-) m6A CDS       25412662//22608085 chr1:54998085-54998086(-) m6A CDS       25412662//24981863//22608085 chr1:54998094-54998095(-) m6A CDS       25412662//24981863//22608085 chr1:54998144-54998145(-) m6A CDS       25412662//24981863//22608085 chr1:54998230-54998231(-) m6A CDS       25412662//22608085 chr1:54999674-54999675(-) m6A CDS       25412662//22608085 chr1:54999700-54999701(-) m6A CDS       25412662//22608085 chr1:54999711-54999712(-) m6A CDS       25412662//22608085 chr1:54999730-54999731(-) m6A CDS       22608085 chr1:54999743-54999744(-) m6A CDS       22608085 chr1:55003169-55003170(-) m6A CDS//exon       22608085 chr1:55003298-55003299(-) m6A CDS//exon       22608085 chr1:55003325-55003326(-) m6A CDS//exon       22608085 chr1:55003375-55003376(-) m6A CDS//exon       22608085 chr1:55003380-55003381(-) m6A CDS//exon       22608085 chr1:55003387-55003388(-) m6A CDS//exon       22608085 chr1:55003453-55003454(-) m6A CDS//exon       22608085 chr1:55005853-55005854(-) m6A CDS//exon       22608085 chr1:55005897-55005898(-) m6A CDS//exon       24981863//22608085 chr1:55006190-55006191(-) m6A CDS//exon       24981863//22608085 chr1:55006215-55006216(-) m6A CDS//exon       24981863//22608085 chr1:55006311-55006312(-) m6A CDS//exon       24981863 chr1:55006325-55006326(-) m6A CDS//exon       24981863//22608085 chr1:55006341-55006342(-) m6A CDS//exon       24981863//22608085 chr1:55006350-55006351(-) m6A CDS//exon       24981863//22608085 chr1:55007488-55007489(-) m6A CDS//exon       24981863//22608085 chr1:55007497-55007498(-) m6A CDS//exon       24981863//22608085 chr1:55007511-55007512(-) m6A CDS//exon       24981863//22608085 chr1:55007619-55007620(-) m6A CDS//exon       24981863//22608085 chr1:55007653-55007654(-) m6A CDS//exon       24981863//22608085 chr1:55012148-55012149(-) m6A CDS//exon       25412662//24981863//22608085 chr1:55012160-55012161(-) m6A CDS//exon       25412662//24981863//22608085 chr1:55012227-55012228(-) m6A CDS//exon       25412662//24981863//22608085 chr1:55014503-55014504(-) m6A 3'UTR//CDS//exon       24981863//22608085 chr1:55014526-55014527(-) m6A 3'UTR//CDS//exon       24981863//22608085 chr1:55014553-55014554(-) m6A 3'UTR//CDS//exon       24981863//22608085 chr1:55016417-55016418(-) m6A CDS//exon       22608085 chr1:55019242-55019243(-) m6A CDS//exon       25569111 chr1:55027347-55027348(-) m6A CDS//exon       25412662//24981863//25569111 chr1:55027370-55027371(-) m6A 5'UTR//exon       25412662//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Sf3b1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Sf3b1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar