Basic Information:

  VIRBase ID:  

VHID00616836

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Vps33a:  NM_029929     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Vps33a
miRBase Accession/Entrez ID	MIMAT0005552	77573
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	3830421M04Rik//AI503300//AW048546//AW554476//bf

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Vps33a	chr5:123528977-123528978(-) m6A 3'UTR       25683224//24981863 chr5:123528990-123528991(-) m6A 3'UTR       25683224//24981863 chr5:123529027-123529028(-) m6A 3'UTR       25683224//24981863 chr5:123529054-123529055(-) m6A 3'UTR       25683224//24981863 chr5:123529151-123529152(-) m6A 3'UTR       - chr5:123529170-123529171(-) m6A 3'UTR       - chr5:123529199-123529200(-) m6A 3'UTR       22608085 chr5:123529455-123529456(-) Y 3'UTR//exon       26075521 chr5:123529512-123529513(-) m6A 3'UTR       22608085 chr5:123529608-123529609(-) m6A 3'UTR       22608085 chr5:123529640-123529641(-) m6A 3'UTR       22608085 chr5:123529758-123529759(-) m6A 3'UTR       22608085 chr5:123529911-123529912(-) m6A 3'UTR       25412662//24981863//25569111//22608085 chr5:123529944-123529945(-) m6A 3'UTR       25412662//24981863//25569111//22608085 chr5:123530049-123530050(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr5:123530235-123530236(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:123530263-123530264(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:123530351-123530352(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:123530441-123530442(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:123530562-123530563(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:123530661-123530662(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:123530702-123530703(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr5:123530815-123530816(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:123530847-123530848(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr5:123530861-123530862(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr5:123530889-123530890(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr5:123530959-123530960(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr5:123531076-123531077(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr5:123531090-123531091(-) m6A CDS       25683224//25456834//24981863//25569111 chr5:123531205-123531206(-) m6A CDS       22608085 chr5:123531855-123531856(-) m6A CDS       22608085 chr5:123535238-123535239(-) m6A CDS       22608085 chr5:123547109-123547110(-) m6A CDS       25412662//22608085 chr5:123554846-123554847(-) m6A exon//intron       25412662//22608085 chr5:123554938-123554939(-) m6A exon//intron       25412662 chr5:123554973-123554974(-) m6A exon//intron       25412662 chr5:123558674-123558675(-) m6A CDS//exon       25412662//22608085 chr5:123558680-123558681(-) m6A CDS//exon       25412662//22608085 chr5:123558746-123558747(-) m6A CDS//exon       25412662//22608085 chr5:123561684-123561685(-) m6A intron       25412662 chr5:123561826-123561827(-) m6A intron       25412662//22608085 chr5:123570979-123570980(-) m6A CDS       24981863 chr5:123571503-123571504(-) m6A CDS       24981863//25569111 chr5:123571512-123571513(-) m6A CDS       24981863//25569111 chr5:123572898-123572899(-) m6A CDS       24981863//25569111 chr5:123572949-123572950(-) m6A CDS       25412662//24981863//25569111

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Vps33a

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar