Basic Information:

  VIRBase ID:  

VHID00616728

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Xpo6:  NM_001311143     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Xpo6
miRBase Accession/Entrez ID	MIMAT0005552	74204
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2610005L19Rik//AL022631//C230091E20Rik//exp6//mKIAA0370//R75304//Ran//Ranbp20

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Xpo6	chr7:133274105(-) A-I      intronic chr7:133279971(-) A-I      intronic chr7:133279966(-) A-I      intronic chr7:133274111(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Xpo6	chr7:126130591(-) A-I intron -    22524474 chr7:126130597(-) A-I intron -    22524474 chr7:126136452(-) A-I intron -    22524474 chr7:126136457(-) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Xpo6	chr7:126101717-126101718(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr7:126101802-126101803(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr7:126101873-126101874(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:126101958-126101959(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:126102017-126102018(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:126102050-126102051(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:126102237-126102238(-) Y 3'UTR//exon       26075521 chr7:126104829-126104830(-) Y 3'UTR//CDS//exon//intron       26075521 chr7:126104921-126104922(-) m6A 3'UTR//CDS//exon//intron       25569111 chr7:126108619-126108620(-) m6A 3'UTR//CDS//exon       25412662 chr7:126120078-126120079(-) m6A exon//intron       25683224 chr7:126120144-126120145(-) m6A exon//intron       25683224 chr7:126120191-126120192(-) m6A exon//intron       25683224 chr7:126152815-126152816(-) m6A exon//intron       25456834//24981863//25569111//22608085 chr7:126152836-126152837(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr7:126152904-126152905(-) m6A CDS//exon       25683224//25456834//24981863//25412662//25569111//22608085//22575960 chr7:126152954-126152955(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:126152968-126152969(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:126153029-126153030(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:126179778-126179779(-) m6A exon//intron       25412662 chr7:126179790-126179791(-) m6A exon//intron       25412662 chr7:126179844-126179845(-) m6A exon//intron       25412662 chr7:126199953-126199954(-) m6A 5'UTR//exon       25683224//25412662//22608085 chr7:126199967-126199968(-) m6A 5'UTR//exon       25683224//25412662//22608085 chr7:126199979-126199980(-) m6A 5'UTR//exon       25683224//25412662//22608085 chr7:126199998-126199999(-) m6A 5'UTR//exon       25683224//25412662//22608085 chr7:126200024-126200025(-) m6A 5'UTR//exon       25683224//22608085 chr7:126200336-126200337(-) m6A 5'UTR//exon       25412662//24981863//25569111 chr7:126200351-126200352(-) m6A 5'UTR//exon       25412662//24981863//25569111

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Xpo6

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar