Basic Information:

  VIRBase ID:  

VHID00616136

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Fubp1:  NR_149713     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Fubp1
miRBase Accession/Entrez ID	MIMAT0005552	51886
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	9530027K12Rik//D3Ertd330e//FB//FBP//Fub//Fubp//Fubp4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Fubp1	chr3:151893858(+) A-I      intronic chr3:151892940(+) A-I      intronic chr3:151893863(+) A-I      intronic chr3:151892953(+) A-I      intronic chr3:151893857(+) A-I      intronic chr3:151892973(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Fubp1	chr3:152229976(+) A-I intron -    16940548 chr3:152229989(+) A-I intron -    16940548 chr3:152230009(+) A-I intron -    16940548 chr3:152230893(+) A-I intron -    16940548 chr3:152230894(+) A-I intron -    16940548 chr3:152230899(+) A-I intron -    16940548

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Fubp1	chr3:152210427-152210428(+) m6A 5'UTR       24981863 chr3:152214041-152214042(+) m6A CDS       22608085 chr3:152214050-152214051(+) m6A CDS       22608085 chr3:152215575-152215576(+) m6A 3'UTR//intron       22608085 chr3:152217994-152217995(+) m6A 3'UTR//CDS//exon       22608085 chr3:152218253-152218254(+) m6A 3'UTR//CDS//exon       22608085 chr3:152218306-152218307(+) m6A exon//intron       22608085 chr3:152218313-152218314(+) m6A exon//intron       22608085 chr3:152218491-152218492(+) m6A exon//intron       22608085 chr3:152219703-152219704(+) m6A 3'UTR//CDS       22608085 chr3:152219725-152219726(+) m6A CDS       22608085 chr3:152219755-152219756(+) m6A CDS       24981863//22608085 chr3:152219803-152219804(+) m6A CDS       24981863//22608085 chr3:152219828-152219829(+) m6A CDS       24981863//22608085 chr3:152219836-152219837(+) m6A CDS       24981863//22608085 chr3:152219978-152219979(+) m6A CDS       24981863//22608085 chr3:152219994-152219995(+) m6A CDS       24981863//22608085 chr3:152220006-152220007(+) Y CDS//exon       26075521 chr3:152220693-152220694(+) m6A CDS       24981863 chr3:152220725-152220726(+) m6A CDS       24981863 chr3:152220733-152220734(+) m6A CDS       24981863 chr3:152220766-152220767(+) m6A CDS       22608085 chr3:152221283-152221284(+) m6A CDS       22608085 chr3:152221289-152221290(+) m6A CDS       22608085 chr3:152221324-152221325(+) m6A CDS       22608085 chr3:152221349-152221350(+) m6A CDS       22608085 chr3:152221386-152221387(+) m6A CDS       22608085 chr3:152221391-152221392(+) m6A CDS       22608085 chr3:152221902-152221903(+) m6A exon//intron       22608085 chr3:152221914-152221915(+) m6A exon//intron       22608085 chr3:152224073-152224074(+) m6A 3'UTR//intron       24981863 chr3:152224112-152224113(+) m6A 3'UTR//intron       24981863 chr3:152231955-152231956(+) m6A CDS//exon       24981863//22608085 chr3:152231980-152231981(+) m6A CDS//exon       24981863//22608085 chr3:152232029-152232030(+) m6A CDS//exon//intron       24981863//22608085 chr3:152232413-152232414(+) m6A 3'UTR//CDS//exon//intron       24981863 chr3:152232449-152232450(+) m6A 3'UTR//CDS//exon//intron       24981863//22608085 chr3:152235579-152235580(+) m6A 3'UTR       24981863 chr3:152236608-152236609(+) m6A 3'UTR       24981863 chr3:152236659-152236660(+) m6A 3'UTR       24981863 chr3:152236686-152236687(+) m6A 3'UTR       24981863 chr3:152236713-152236714(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Fubp1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Fubp1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar