Detail Information

Basic Information:


  VIRBase ID:  

VHID00616125

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:           Tmod2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m88-1-3p Tmod2
miRBase
Accession/Entrez ID		 MIMAT0005552 50876
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - N-Tm//N-Tmod//NTM//NTMOD

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Tmod2
chr9:75425855(-) A-I      intronic
chr9:75425796(-) A-I      intronic
chr9:75425863(-) A-I      intronic
chr9:75425804(-) A-I      intronic
chr9:75423221(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Tmod2
chr9:75575414(-) A-I intron -    22524474
chr9:75577989(-) A-I intron -    22524474
chr9:75577997(-) A-I intron -    22524474
chr9:75578048(-) A-I intron -    22524474
chr9:75578056(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Tmod2
chr9:75565840-75565841(-) m6A 3'UTR       26404942
chr9:75565866-75565867(-) m6A 3'UTR       26404942
chr9:75565914-75565915(-) m6A 3'UTR       26404942//22608085
chr9:75565943-75565944(-) m6A 3'UTR       26404942//22608085
chr9:75566068-75566069(-) m6A 3'UTR       26404942//22608085
chr9:75566085-75566086(-) m6A 3'UTR       26404942//22608085
chr9:75566093-75566094(-) m6A 3'UTR       26404942//22608085
chr9:75566372-75566373(-) m6A 3'UTR       26404942//22608085
chr9:75566392-75566393(-) m6A 3'UTR       26404942//22608085
chr9:75566649-75566650(-) m6A 3'UTR       25683224//22608085
chr9:75566680-75566681(-) m6A 3'UTR       25683224//22608085
chr9:75566868-75566869(-) m6A 3'UTR       25683224//22608085
chr9:75566876-75566877(-) m6A 3'UTR       25683224//22608085
chr9:75566884-75566885(-) m6A 3'UTR       25683224//22608085
chr9:75567088-75567089(-) m6A 3'UTR       25683224//22608085
chr9:75567111-75567112(-) m6A 3'UTR       25683224//22608085
chr9:75567685-75567686(-) m6A 3'UTR       25683224//24981863//26404942//22608085
chr9:75567691-75567692(-) m6A 3'UTR       25683224//24981863//26404942//22608085
chr9:75567774-75567775(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75567784-75567785(-) m6A 3'UTR       25683224//22608085
chr9:75567824-75567825(-) m6A 3'UTR       25683224//22608085
chr9:75567890-75567891(-) m6A 3'UTR       25683224//22608085
chr9:75568092-75568093(-) m6A 3'UTR       25683224//26404942//22608085
chr9:75568119-75568120(-) m6A 3'UTR       25683224//26404942//22608085
chr9:75568218-75568219(-) m6A 3'UTR       25683224//22608085
chr9:75568229-75568230(-) m6A 3'UTR       25683224//22608085
chr9:75568295-75568296(-) m6A 3'UTR       25683224//22608085
chr9:75568532-75568533(-) m6A 3'UTR       25683224//22608085
chr9:75568610-75568611(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75568671-75568672(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75568705-75568706(-) m6A 3'UTR       25683224//22608085
chr9:75568772-75568773(-) m6A 3'UTR       25683224//22608085
chr9:75568856-75568857(-) m6A 3'UTR       25683224//22608085
chr9:75568946-75568947(-) m6A 3'UTR       25683224//26404942//22608085
chr9:75568974-75568975(-) m6A 3'UTR       25683224//22608085
chr9:75569052-75569053(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569060-75569061(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569191-75569192(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569206-75569207(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569273-75569274(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569304-75569305(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569341-75569342(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569365-75569366(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569376-75569377(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569452-75569453(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569459-75569460(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569472-75569473(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75569677-75569678(-) m6A 3'UTR       25683224//22608085
chr9:75569733-75569734(-) m6A 3'UTR       25683224//22608085
chr9:75569748-75569749(-) m6A 3'UTR       25683224//22608085
chr9:75569801-75569802(-) m6A 3'UTR       25683224//22608085
chr9:75569938-75569939(-) m6A 3'UTR       25683224//22608085
chr9:75570004-75570005(-) m6A 3'UTR       25683224//22608085
chr9:75570970-75570971(-) m6A 3'UTR       25683224//22608085
chr9:75571217-75571218(-) m6A 3'UTR       25683224//22608085
chr9:75571666-75571667(-) m6A 3'UTR       25683224//22608085
chr9:75571706-75571707(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75571753-75571754(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75571758-75571759(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75571774-75571775(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75571779-75571780(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75571794-75571795(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75571808-75571809(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75571818-75571819(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75571826-75571827(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75571860-75571861(-) m6A 3'UTR       25683224//26404942//22608085
chr9:75571890-75571891(-) m6A 3'UTR       25683224//26404942//22608085
chr9:75571962-75571963(-) m6A 3'UTR       25683224//22608085
chr9:75571989-75571990(-) m6A 3'UTR       25683224//22608085
chr9:75572342-75572343(-) m6A 3'UTR       25683224//22608085
chr9:75572366-75572367(-) m6A 3'UTR       25683224//22608085
chr9:75572523-75572524(-) m6A 3'UTR       25683224//24981863//26404942//22608085
chr9:75572600-75572601(-) m6A 3'UTR       25683224//24981863//26404942//22608085
chr9:75572650-75572651(-) m6A 3'UTR       25683224//24981863//26404942//22608085
chr9:75572665-75572666(-) m6A 3'UTR       25683224//24981863//26404942//22608085
chr9:75573071-75573072(-) m6A 3'UTR       25683224//22608085
chr9:75573133-75573134(-) m6A 3'UTR       25683224//22608085
chr9:75573437-75573438(-) m6A 3'UTR       25683224//22608085
chr9:75573497-75573498(-) m6A 3'UTR       25683224//22608085
chr9:75573676-75573677(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75573761-75573762(-) m6A 3'UTR       25683224//24981863//22608085
chr9:75573783-75573784(-) m6A 3'UTR       25683224//24981863
chr9:75573850-75573851(-) m6A 3'UTR       25683224//24981863
chr9:75573893-75573894(-) m6A 3'UTR       25683224//24981863
chr9:75574012-75574013(-) m6A 3'UTR       25683224//24981863//26404942//22608085
chr9:75574040-75574041(-) m6A 3'UTR       25683224//24981863//26404942//22608085
chr9:75574098-75574099(-) m6A CDS       25683224//24981863//26404942
chr9:75576684-75576685(-) m6A CDS       25683224//24981863//22608085
chr9:75576734-75576735(-) m6A CDS       25683224//24981863//22608085
chr9:75576774-75576775(-) m6A CDS       25683224//24981863//22608085
chr9:75577221-75577222(-) m6A CDS       25683224//22608085
chr9:75581891-75581892(-) m6A CDS       25683224//22608085
chr9:75586129-75586130(-) m6A CDS       25683224//22608085
chr9:75592578-75592579(-) m6A CDS       25683224//24981863//22608085
chr9:75592585-75592586(-) m6A CDS       25683224//24981863//22608085
chr9:75592614-75592615(-) m6A CDS       25683224//24981863//22608085
chr9:75592621-75592622(-) m6A CDS       25683224//24981863//22608085
chr9:75592649-75592650(-) m6A CDS       25683224//24981863//22608085
chr9:75594949-75594950(-) m6A CDS       25683224//24981863//22608085
chr9:75594958-75594959(-) m6A CDS       25683224//24981863//22608085
chr9:75594966-75594967(-) m6A CDS       25683224//24981863//22608085
chr9:75595002-75595003(-) m6A CDS       25683224//24981863//22608085
chr9:75595037-75595038(-) m6A CDS       25683224//24981863//22608085
chr9:75595042-75595043(-) m6A CDS       25683224//24981863//22608085
chr9:75597245-75597246(-) m6A CDS       25683224//22608085
chr9:75597251-75597252(-) m6A CDS       25683224//22608085
chr9:75597266-75597267(-) m6A CDS       25683224//22608085
chr9:75597294-75597295(-) m6A CDS       25683224//22608085
chr9:75597337-75597338(-) m6A 5'UTR       25683224//24981863//22608085
chr9:75611216-75611217(-) m6A 5'UTR       24981863
chr9:75611304-75611305(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Tmod2
Nucleus Neuroblastoma cell line (N2A)     22406755
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m88-1-3p
Interactor2: Tmod2

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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