Basic Information:

  VIRBase ID:  

VHID00615611

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m88-1-3p:  MIMAT0005552          Hspa4:  NM_008300     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m88-1-3p	Hspa4
miRBase Accession/Entrez ID	MIMAT0005552	15525
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	70kD//70kDa//AI317151//APG//APG-2//Hsp1//Hsp110//Hsp7//Hsp70RY//mKIAA4025

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Hspa4	chr11:53264295(-) A-I intron -    22524474 chr11:53264312(-) A-I intron -    22524474 chr11:53264326(-) A-I intron -    22524474 chr11:53264339(-) A-I intron -    22524474 chr11:53264344(-) A-I intron -    22524474 chr11:53264348(-) A-I intron -    22524474 chr11:53264351(-) A-I intron -    22524474 chr11:53264355(-) A-I intron -    22524474 chr11:53264358(-) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Hspa4	chr11:53259858-53259859(-) m6A 3'UTR       - chr11:53259872-53259873(-) m6A 3'UTR       - chr11:53259902-53259903(-) m6A 3'UTR       - chr11:53259917-53259918(-) m6A 3'UTR       - chr11:53259947-53259948(-) m6A 3'UTR       - chr11:53260002-53260003(-) m6A 3'UTR       - chr11:53260115-53260116(-) m6A 3'UTR       25683224//24981863//25569111//26404942 chr11:53260123-53260124(-) m6A 3'UTR       25683224//24981863//25569111//26404942 chr11:53260262-53260263(-) m6A 3'UTR       24981863//25569111//26404942 chr11:53260286-53260287(-) m6A 3'UTR       24981863//25569111//26404942 chr11:53260406-53260407(-) Y 3'UTR//exon       26075521 chr11:53260622-53260623(-) m6A 3'UTR       26404942//22608085 chr11:53260645-53260646(-) m6A 3'UTR       26404942//22608085 chr11:53260669-53260670(-) m6A 3'UTR       26404942//22608085 chr11:53260711-53260712(-) m6A 3'UTR       22608085 chr11:53260789-53260790(-) m6A 3'UTR       25683224//22608085 chr11:53260980-53260981(-) Y 3'UTR//exon       26075521 chr11:53261308-53261309(-) m6A 3'UTR       25683224//22608085 chr11:53261494-53261495(-) m6A 3'UTR       25683224//24981863//25456834//25569111//26404942 chr11:53261587-53261588(-) m6A 3'UTR       25683224//25412662//24981863//25456834//25569111//26404942//22608085//22575960 chr11:53261621-53261622(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//26404942//22608085//22575960 chr11:53261666-53261667(-) m6A CDS       25412662//24981863//25456834//25569111//26404942//22608085//22575960 chr11:53261702-53261703(-) m6A CDS       25412662//24981863//25569111//26404942//22608085//22575960 chr11:53261722-53261723(-) m6A CDS       25412662//24981863//25569111//26404942//22608085//22575960 chr11:53261740-53261741(-) m6A CDS       25412662//24981863//25569111//26404942//22608085 chr11:53261746-53261747(-) m6A CDS       25412662//24981863//25569111//26404942//22608085 chr11:53261761-53261762(-) m6A CDS       25412662//24981863//25569111//26404942 chr11:53261773-53261774(-) m6A CDS       25412662//24981863//25569111//26404942 chr11:53261779-53261780(-) m6A CDS       25412662//24981863//25569111//26404942 chr11:53262289-53262290(-) m6A CDS       24981863//25569111//26404942 chr11:53262324-53262325(-) m6A CDS       24981863 chr11:53262410-53262411(-) m6A CDS       24981863 chr11:53262420-53262421(-) m6A CDS       24981863 chr11:53262883-53262884(-) m6A CDS//exon       24981863 chr11:53262933-53262934(-) m6A CDS//exon       24981863 chr11:53262951-53262952(-) m6A CDS//exon       24981863 chr11:53262977-53262978(-) m6A CDS//exon       24981863 chr11:53264325-53264326(-) m6A exon//intron       - chr11:53264341-53264342(-) m6A exon//intron       - chr11:53264955-53264956(-) m6A exon//intron       - chr11:53265052-53265053(-) m6A CDS//exon       24981863 chr11:53265963-53265964(-) m6A CDS//exon       24981863 chr11:53266025-53266026(-) m6A CDS//exon       25412662//24981863 chr11:53266999-53267000(-) m6A CDS//exon       25412662//24981863 chr11:53267035-53267036(-) m6A CDS//exon       25683224//25412662//24981863 chr11:53267048-53267049(-) m6A CDS//exon       25683224//25412662//24981863 chr11:53267083-53267084(-) m6A CDS//exon       25683224//25412662//24981863 chr11:53267117-53267118(-) m6A CDS//exon       25683224//25412662//24981863 chr11:53268514-53268515(-) m6A CDS//exon       25683224//25412662//24981863//25456834 chr11:53268527-53268528(-) m6A CDS//exon       25683224//25412662//24981863//25456834 chr11:53268561-53268562(-) m6A CDS//exon       25683224//25412662//24981863//25456834 chr11:53268571-53268572(-) m6A CDS//exon       25683224//25412662//24981863//25456834 chr11:53272780-53272781(-) m6A CDS//exon       22608085 chr11:53280477-53280478(-) m6A CDS//exon       22608085 chr11:53280527-53280528(-) m6A CDS//exon       22608085 chr11:53280559-53280560(-) m6A CDS//exon       22608085 chr11:53280611-53280612(-) m6A CDS//exon       22608085 chr11:53283534-53283535(-) m6A CDS//exon       22608085 chr11:53283579-53283580(-) m6A CDS//exon       22608085 chr11:53283609-53283610(-) m6A CDS//exon       22608085 chr11:53283631-53283632(-) m6A CDS//exon       22608085 chr11:53283636-53283637(-) m6A CDS//exon       22608085 chr11:53284108-53284109(-) m6A CDS//exon       22608085 chr11:53286865-53286866(-) m6A CDS//exon       22608085 chr11:53286899-53286900(-) m6A CDS//exon       22608085 chr11:53286909-53286910(-) m6A CDS//exon       22608085 chr11:53286936-53286937(-) m6A CDS//exon       24981863//22608085 chr11:53300146-53300147(-) m6A CDS//exon       25569111//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Hspa4	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m88-1-3p
Interactor2: Hspa4

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar