Basic Information:

  VIRBase ID:  

VHID00614810

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M87-1:  MIMAT0005550          Fgd4:  NM_001301817     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M87-1	Fgd4
miRBase Accession/Entrez ID	MIMAT0005550	224014
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	9030023J02Rik//9330209B17Rik//Fr//Frabp//ZFYVE//ZFYVE6

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Fgd4	chr16:16417025-16417026(-) Y 3'UTR//exon       26075521 chr16:16421348-16421349(-) m6A 3'UTR       24981863 chr16:16421362-16421363(-) m6A 3'UTR       24981863 chr16:16421386-16421387(-) m6A 3'UTR       24981863 chr16:16422451-16422452(-) m6A 3'UTR       25456834//24981863 chr16:16422512-16422513(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr16:16422561-16422562(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr16:16422586-16422587(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr16:16422599-16422600(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr16:16422636-16422637(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr16:16422679-16422680(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr16:16422685-16422686(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr16:16422695-16422696(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr16:16475146-16475147(-) m6A CDS//exon       24981863 chr16:16477474-16477475(-) m6A CDS//exon       25456834//24981863 chr16:16477495-16477496(-) m6A CDS//exon       25456834//24981863 chr16:16477501-16477502(-) m6A CDS//exon       25456834//24981863 chr16:16477509-16477510(-) m6A CDS//exon       25456834//24981863 chr16:16484077-16484078(-) m6A exon//intron       25683224//25456834//24981863//22608085 chr16:16484084-16484085(-) m6A exon//intron       25683224//25456834//24981863//22608085 chr16:16484108-16484109(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr16:16484132-16484133(-) m6A CDS//exon       25683224//25456834//24981863//25412662//25569111//22608085 chr16:16484204-16484205(-) m6A CDS//exon       25683224//25456834//24981863//25412662//25569111//22608085 chr16:16484217-16484218(-) m6A CDS//exon       25683224//25456834//24981863//25412662//25569111//22608085 chr16:16484286-16484287(-) m6A CDS//exon       25683224//25456834//24981863//25412662//25569111//22608085 chr16:16484337-16484338(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr16:16484367-16484368(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr16:16484396-16484397(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr16:16484445-16484446(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr16:16484527-16484528(-) m6A CDS//exon       25456834//24981863//25569111 chr16:16484535-16484536(-) m6A CDS//exon       25456834//24981863//25569111 chr16:16484552-16484553(-) m6A CDS//exon       25456834//24981863//25569111 chr16:16504013-16504014(-) m6A exon//intron       24981863//22608085 chr16:16504135-16504136(-) m6A 5'UTR//exon       25569111 chr16:16560105-16560106(-) m6A 5'UTR//exon//intron       24981863 chr16:16560193-16560194(-) m6A 5'UTR//exon//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Fgd4	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M87-1
Interactor2: Fgd4

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar