Basic Information:

  VIRBase ID:  

VHID00614430

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M87-1:  MIMAT0005550          Tsc22d4:  NM_029805     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M87-1	Tsc22d4
miRBase Accession/Entrez ID	MIMAT0005550	78829
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	0610009M14Rik//1700023B23Rik//AI415410//Thg-1p//Thg-1pit//Tilz2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Tsc22d4	chr5:137745732-137745733(+) m6A 5'UTR       24981863 chr5:137745768-137745769(+) m6A 5'UTR       25683224//25412662//24981863 chr5:137745961-137745962(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137746007-137746008(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137746013-137746014(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137746098-137746099(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137746148-137746149(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr5:137746223-137746224(+) m6A 5'UTR//exon       25683224//25412662//24981863//25569111 chr5:137746269-137746270(+) m6A 5'UTR//exon       25683224//25412662//24981863//25569111 chr5:137746894-137746895(+) m6A 5'UTR//exon       25683224//25412662//24981863//25569111 chr5:137746990-137746991(+) m6A 5'UTR//exon       25683224//25412662//24981863//25456834//25569111 chr5:137747112-137747113(+) m6A 5'UTR//exon       25683224//25412662//24981863//25456834//25569111 chr5:137747167-137747168(+) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111 chr5:137747254-137747255(+) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111 chr5:137747594-137747595(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr5:137747639-137747640(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr5:137747661-137747662(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr5:137747712-137747713(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr5:137747730-137747731(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr5:137747850-137747851(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr5:137751280-137751281(+) m6A CDS//exon       25569111 chr5:137751352-137751353(+) m6A CDS//exon       25569111 chr5:137758165-137758166(+) m6A CDS//intron       25683224//24981863 chr5:137758220-137758221(+) m6A 5'UTR//intron       25683224//24981863 chr5:137758460-137758461(+) m6A CDS//intron       25683224//22608085 chr5:137758522-137758523(+) m6A CDS//intron       25683224//25412662//22608085 chr5:137758722-137758723(+) m6A CDS//exon       25683224//25412662//22608085 chr5:137758814-137758815(+) m6A exon//intron       25683224//25412662//24981863//22608085 chr5:137759136-137759137(+) m6A CDS//intron       25412662//24981863//22608085 chr5:137759523-137759524(+) m6A 3'UTR//intron       25683224//22608085 chr5:137759829-137759830(+) m6A 3'UTR//intron       25456834 chr5:137760117-137760118(+) m6A 3'UTR//intron       25569111 chr5:137762443-137762444(+) m6A CDS       25412662 chr5:137762463-137762464(+) m6A CDS       25412662

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Tsc22d4	Cytoplasm Neuroblastoma cell line (N2A)     22406755 Exosome Mast cells     17486113

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M87-1
Interactor2: Tsc22d4

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar