Basic Information:

  VIRBase ID:  

VHID00612915

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-2:  MIMAT0005549          Sp1:  NM_013672     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m59-2	Sp1
miRBase Accession/Entrez ID	MIMAT0005549	20683
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	1110003E12Rik//AA450830//AI845540//Sp1-1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Sp1	chr15:102406384-102406385(+) m6A 5'UTR//intron       25683224//25569111 chr15:102407287-102407288(+) m6A 5'UTR//intron       25683224 chr15:102407771-102407772(+) m6A 5'UTR//CDS       25683224//25569111 chr15:102407878-102407879(+) m6A CDS       25683224//25412662//24981863//25569111 chr15:102408282-102408283(+) m6A CDS//intron       25683224//25412662//24981863//25569111 chr15:102408328-102408329(+) m6A CDS//intron       25683224//25412662//24981863//25569111 chr15:102408418-102408419(+) m6A CDS//intron       25683224//25412662//24981863//25569111 chr15:102408459-102408460(+) m6A CDS//intron       25412662//24981863//25569111 chr15:102408513-102408514(+) m6A CDS//intron       24981863//25569111 chr15:102408584-102408585(+) m6A CDS//intron       24981863//25569111 chr15:102408675-102408676(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr15:102408787-102408788(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr15:102408831-102408832(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr15:102408950-102408951(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:102409062-102409063(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:102409088-102409089(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:102409149-102409150(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102409161-102409162(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102409166-102409167(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102409223-102409224(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102409243-102409244(+) Y CDS//exon       26075521 chr15:102409270-102409271(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102409309-102409310(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102409343-102409344(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102409353-102409354(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102409377-102409378(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102409400-102409401(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:102409423-102409424(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:102409439-102409440(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:102409470-102409471(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:102409484-102409485(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:102409526-102409527(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:102409634-102409635(+) m6A CDS       24981863//25456834//25569111//22608085 chr15:102409710-102409711(+) m6A CDS       24981863//25569111 chr15:102425641-102425642(+) m6A CDS       24981863//25569111 chr15:102425689-102425690(+) m6A CDS       25569111//22608085 chr15:102425746-102425747(+) m6A CDS       25569111//22608085 chr15:102425783-102425784(+) m6A CDS       24981863//25569111//22608085 chr15:102429983-102429984(+) m6A CDS//exon       25569111//22608085 chr15:102430029-102430030(+) m6A CDS//exon       25569111//22608085 chr15:102430136-102430137(+) m6A CDS//exon       25569111 chr15:102430798-102430799(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr15:102430808-102430809(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr15:102430859-102430860(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr15:102431038-102431039(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr15:102431054-102431055(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102431109-102431110(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:102432680-102432681(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Sp1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m59-2
Interactor2: Sp1

Evidence Support:

Prediction-Evidence	Rep
Support Database	RepTar