Basic Information:

  VIRBase ID:  

VHID00612760

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:  MIMAT0005548          Pdp1:  NM_001290387     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m59-1	Pdp1
miRBase Accession/Entrez ID	MIMAT0005548	381511
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	Gm1024//Ppm//Ppm2c

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Pdp1	chr4:11958934-11958935(-) Y 3'UTR//exon       26075521 chr4:11960821-11960822(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:11960911-11960912(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:11960922-11960923(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:11961068-11961069(-) m6A CDS       25456834//24981863//25412662//25569111//26404942//22608085 chr4:11961167-11961168(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr4:11961205-11961206(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr4:11961211-11961212(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr4:11961226-11961227(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr4:11961463-11961464(-) m6A CDS       25456834//24981863//25412662//25569111//26404942//22608085 chr4:11961527-11961528(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr4:11961535-11961536(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr4:11961549-11961550(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr4:11961675-11961676(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:11961715-11961716(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:11961786-11961787(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:11961815-11961816(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:11962007-11962008(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:11962099-11962100(-) m6A CDS       25456834//24981863//25569111//22608085 chr4:11962141-11962142(-) m6A CDS       25456834//24981863//25569111//22608085 chr4:11965791-11965792(-) m6A 5'UTR//intron       25412662 chr4:11966327-11966328(-) m6A 5'UTR       25412662//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Pdp1	Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m59-1
Interactor2: Pdp1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar