Detail Information

Basic Information:


  VIRBase ID:  

VHID00612616

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:           Fndc3a:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m59-1 Fndc3a
miRBase
Accession/Entrez ID		 MIMAT0005548 319448
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 1700094E19Rik//D14Ertd453//D14Ertd453e//F730017H24Rik//Fndc//Fndc3//s//sys

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Fndc3a
chr14:72939311(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Fndc3a
chr14:72539504(-) C-I exon 3'UTR    22448268

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Fndc3a
chr14:72538116-72538117(-) m6A 3'UTR       26404942
chr14:72539749-72539750(-) m6A 3'UTR       24981863
chr14:72539799-72539800(-) m6A 3'UTR       24981863
chr14:72539838-72539839(-) m6A 3'UTR       24981863//25569111
chr14:72539854-72539855(-) m6A 3'UTR       24981863//25569111
chr14:72539878-72539879(-) m6A 3'UTR       25569111
chr14:72539933-72539934(-) m6A 3'UTR       25569111
chr14:72539975-72539976(-) m6A 3'UTR       25569111
chr14:72540273-72540274(-) m6A CDS       25456834//24981863//25569111
chr14:72540284-72540285(-) m6A CDS       25456834//24981863//25569111
chr14:72540293-72540294(-) m6A CDS       25456834//24981863//25569111
chr14:72540316-72540317(-) m6A CDS       25456834//24981863//25569111
chr14:72540321-72540322(-) m6A CDS       25456834//24981863//25569111
chr14:72540368-72540369(-) m6A CDS       25456834//24981863//25569111//22575960
chr14:72540386-72540387(-) m6A CDS       25456834//24981863//25569111//22575960
chr14:72573318-72573319(-) m6A CDS       25683224//22608085
chr14:72574374-72574375(-) m6A CDS       25683224//22608085
chr14:72583000-72583001(-) m6A CDS//intron       25683224//24981863//25456834//25412662
chr14:72584624-72584625(-) m6A CDS//intron       25683224//25456834//24981863//25412662//25569111
chr14:72584642-72584643(-) m6A CDS//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr14:72584674-72584675(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr14:72584683-72584684(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085
chr14:72584748-72584749(-) m6A CDS//intron       25683224//25456834//24981863//25569111
chr14:72584790-72584791(-) m6A CDS//intron       24981863//25569111
chr14:72709880-72709881(-) m6A 5'UTR//exon       25412662//24981863//25569111
chr14:72709952-72709953(-) m6A 5'UTR//exon       25412662//24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Fndc3a
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m59-1
Interactor2: Fndc3a

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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