Detail Information

Basic Information:


  VIRBase ID:  

VHID00612525

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:           Ovca2:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m59-1 Ovca2
miRBase
Accession/Entrez ID		 MIMAT0005548 246257
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 9030414M07Rik

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Ovca2
chr11:74989842(-) A-I      3'UTR
chr11:74989934(-) A-I      3'UTR
chr11:74989886(-) A-I      3'UTR
chr11:74990973(-) A-I      3'UTR
chr11:74989847(-) A-I      3'UTR
chr11:74989846(-) A-I      3'UTR
chr11:74989885(-) A-I      3'UTR
chr11:74990961(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Ovca2
chr11:75176344(-) C-I exon 3'UTR    22448268
chr11:75176345(-) C-I exon 3'UTR    22448268
chr11:75176432(-) C-I exon 3'UTR    22448268
chr11:75176340(-) A-I exon 3'UTR    22524474
chr11:75176344(-) A-I exon 3'UTR    22524474
chr11:75176383(-) A-I exon 3'UTR    22524474
chr11:75176384(-) A-I exon 3'UTR    22524474
chr11:75176432(-) A-I exon 3'UTR    22524474
chr11:75177459(-) A-I exon 3'UTR    22524474
chr11:75177471(-) A-I exon 3'UTR    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Ovca2
chr11:75177431-75177432(-) m6A 3'UTR       22608085
chr11:75177572-75177573(-) m6A 3'UTR       24981863//25456834//22608085
chr11:75177642-75177643(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:75177650-75177651(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:75177655-75177656(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:75177722-75177723(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:75177765-75177766(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr11:75177796-75177797(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr11:75177815-75177816(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr11:75177885-75177886(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr11:75177909-75177910(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr11:75178097-75178098(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr11:75178229-75178230(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr11:75178616-75178617(-) m6A CDS//intron       25683224//25412662//25569111
chr11:75178663-75178664(-) m6A CDS//exon       25683224//25412662
chr11:75178719-75178720(-) m6A CDS//exon       25412662

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m59-1
Interactor2: Ovca2

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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