Basic Information:

  VIRBase ID:  

VHID00612493

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:  MIMAT0005548          Ppp1r9a:  NM_181595     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m59-1	Ppp1r9a
miRBase Accession/Entrez ID	MIMAT0005548	243725
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2810430P21Rik//4930518N04Rik//5330407E15//A230094E16Rik//BB181831//N//neur//neurabin-I//NRB

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ppp1r9a	chr6:4903870-4903871(+) m6A 5'UTR//intron       24981863//22608085 chr6:4905229-4905230(+) m6A 5'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905316-4905317(+) m6A 5'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905353-4905354(+) m6A 5'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905444-4905445(+) m6A 5'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905476-4905477(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905518-4905519(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905553-4905554(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905571-4905572(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905673-4905674(+) m6A CDS//exon       25683224//24981863 chr6:4905704-4905705(+) m6A CDS//exon       25683224//24981863 chr6:4905869-4905870(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905912-4905913(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905950-4905951(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4905955-4905956(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906011-4906012(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906077-4906078(+) m6A CDS//exon       25683224//24981863//25569111//22608085 chr6:4906230-4906231(+) m6A CDS//exon       25683224//24981863 chr6:4906389-4906390(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906404-4906405(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906417-4906418(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906431-4906432(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906536-4906537(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906605-4906606(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906611-4906612(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906686-4906687(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906697-4906698(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906725-4906726(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:4906737-4906738(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:5008891-5008892(+) m6A 3'UTR//intron       25456834 chr6:5008918-5008919(+) m6A 3'UTR//intron       25456834 chr6:5008951-5008952(+) m6A 3'UTR//intron       25683224//25456834 chr6:5008964-5008965(+) m6A 3'UTR//intron       25683224//25456834 chr6:5008971-5008972(+) m6A 3'UTR//intron       25683224//25456834 chr6:5009043-5009044(+) m6A 3'UTR//intron       25683224 chr6:5045960-5045961(+) m6A CDS//exon       25683224 chr6:5046036-5046037(+) m6A CDS//exon       25683224//22608085 chr6:5046042-5046043(+) m6A CDS//exon       25683224//22608085 chr6:5046057-5046058(+) m6A CDS//exon       25683224//22608085 chr6:5057540-5057541(+) m6A CDS//exon       25683224//22608085 chr6:5062150-5062151(+) m6A 3'UTR//intron       25683224//22608085 chr6:5062162-5062163(+) m6A 3'UTR//intron       25683224//22608085 chr6:5077500-5077501(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr6:5077506-5077507(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr6:5077540-5077541(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr6:5077548-5077549(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr6:5077751-5077752(+) m6A 3'UTR//intron       25683224//22608085 chr6:5100531-5100532(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr6:5100555-5100556(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr6:5110685-5110686(+) m6A exon//intron       25683224//22608085 chr6:5113646-5113647(+) m6A 3'UTR//CDS//exon       25683224//24981863 chr6:5113720-5113721(+) m6A 3'UTR//CDS//exon       25683224//24981863 chr6:5113756-5113757(+) m6A 3'UTR//CDS//exon       25683224//24981863 chr6:5113817-5113818(+) m6A 3'UTR//CDS//exon       25683224//24981863 chr6:5115139-5115140(+) m6A 3'UTR//CDS//exon       25683224//24981863 chr6:5134157-5134158(+) m6A 3'UTR//CDS//exon       25683224 chr6:5156169-5156170(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr6:5156191-5156192(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr6:5158194-5158195(+) m6A 3'UTR//CDS//exon//intron       25683224//24981863 chr6:5158264-5158265(+) m6A 3'UTR//CDS//exon//intron       25683224//25456834//24981863//25569111//22608085 chr6:5159576-5159577(+) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:5159598-5159599(+) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:5159658-5159659(+) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:5159685-5159686(+) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085 chr6:5159880-5159881(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:5159954-5159955(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:5160056-5160057(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:5160111-5160112(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:5160260-5160261(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:5160377-5160378(+) m6A 3'UTR//exon       25683224//24981863 chr6:5160404-5160405(+) m6A 3'UTR//exon       25683224//24981863 chr6:5160505-5160506(+) m6A 3'UTR//exon       25683224//22608085 chr6:5160690-5160691(+) m6A 3'UTR//exon       24981863 chr6:5160748-5160749(+) m6A 3'UTR//exon       24981863 chr6:5160794-5160795(+) m6A 3'UTR//exon       24981863//22608085 chr6:5160818-5160819(+) m6A 3'UTR//exon       24981863//22608085 chr6:5160981-5160982(+) m6A 3'UTR//exon       24981863 chr6:5160998-5160999(+) m6A 3'UTR//exon       24981863 chr6:5161004-5161005(+) m6A 3'UTR//exon       24981863 chr6:5161016-5161017(+) m6A 3'UTR//exon       24981863 chr6:5161112-5161113(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:5161138-5161139(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:5161172-5161173(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:5161179-5161180(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr6:5161294-5161295(+) m6A 3'UTR//exon       25683224//24981863//22608085 chr6:5161415-5161416(+) m6A 3'UTR//exon       25683224//22608085 chr6:5161422-5161423(+) m6A 3'UTR//exon       25683224//22608085 chr6:5161554-5161555(+) m6A 3'UTR//exon       25683224//24981863 chr6:5161559-5161560(+) m6A 3'UTR//exon       25683224//24981863 chr6:5161669-5161670(+) m6A 3'UTR//exon       24981863//26404942//22608085 chr6:5161676-5161677(+) m6A 3'UTR//exon       24981863//26404942//22608085 chr6:5161688-5161689(+) m6A 3'UTR//exon       24981863//26404942//22608085 chr6:5161734-5161735(+) m6A 3'UTR//exon       25683224//24981863//26404942//22608085 chr6:5161806-5161807(+) m6A 3'UTR//exon       25683224//24981863 chr6:5161848-5161849(+) m6A 3'UTR//exon       25683224//24981863 chr6:5162210-5162211(+) m6A 3'UTR//exon       25683224//24981863 chr6:5162231-5162232(+) m6A 3'UTR//exon       25683224//24981863 chr6:5162243-5162244(+) m6A 3'UTR//exon       25683224//24981863 chr6:5162397-5162398(+) m6A 3'UTR//exon       25683224//25456834//24981863//22608085 chr6:5162413-5162414(+) m6A 3'UTR//exon       25683224//25456834//24981863//22608085 chr6:5162439-5162440(+) m6A 3'UTR//exon       25683224//25456834//24981863//22608085 chr6:5162466-5162467(+) m6A 3'UTR//exon       25683224//25456834//24981863//22608085 chr6:5162483-5162484(+) m6A 3'UTR//exon       25683224//25456834//24981863//22608085 chr6:5162503-5162504(+) m6A 3'UTR//exon       25683224//25456834//24981863//22608085 chr6:5162616-5162617(+) m6A 3'UTR//exon       25683224//24981863 chr6:5162725-5162726(+) m6A 3'UTR//exon       25683224//22608085 chr6:5162796-5162797(+) m6A 3'UTR//exon       25683224//24981863//22608085 chr6:5162830-5162831(+) m6A 3'UTR//exon       25683224//24981863//22608085 chr6:5162855-5162856(+) m6A 3'UTR//exon       24981863//22608085 chr6:5162910-5162911(+) m6A 3'UTR//exon       24981863//22608085 chr6:5164366-5164367(+) m6A 3'UTR//exon       25683224//24981863 chr6:5164387-5164388(+) m6A 3'UTR//exon       25683224//24981863 chr6:5165193-5165194(+) m6A 3'UTR       25683224//24981863 chr6:5165232-5165233(+) m6A 3'UTR       25683224//25456834//24981863 chr6:5165276-5165277(+) m6A 3'UTR       25683224//25456834//24981863//26404942 chr6:5165366-5165367(+) m6A 3'UTR       25456834//24981863//26404942 chr6:5165372-5165373(+) m6A 3'UTR       25456834//24981863//26404942 chr6:5165419-5165420(+) m6A 3'UTR       24981863//26404942

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m59-1
Interactor2: Ppp1r9a

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar