Basic Information:

  VIRBase ID:  

VHID00612437

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:  MIMAT0005548          Lnpep:  NM_172827     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m59-1	Lnpep
miRBase Accession/Entrez ID	MIMAT0005548	240028
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2010309L07Rik//4732490P18Rik//CAP//gp16//gp160//IRAP//PLAP//vp1//vp165

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Lnpep	chr17:17528467-17528468(-) m6A 3'UTR       25683224//22608085 chr17:17528485-17528486(-) m6A 3'UTR       25683224//22608085 chr17:17528542-17528543(-) m6A 3'UTR       25683224//22608085 chr17:17528558-17528559(-) m6A 3'UTR       25683224//22608085 chr17:17528585-17528586(-) m6A 3'UTR       25683224//22608085 chr17:17538526-17538527(-) m6A CDS       25683224//22608085 chr17:17538579-17538580(-) m6A CDS       25683224//22608085 chr17:17538655-17538656(-) m6A CDS       25683224//25569111 chr17:17538661-17538662(-) m6A CDS       25683224//25569111 chr17:17538678-17538679(-) m6A CDS       25683224//25569111 chr17:17544829-17544830(-) m6A CDS       25683224 chr17:17544843-17544844(-) m6A CDS       25683224 chr17:17573951-17573952(-) m6A CDS       25683224//22608085 chr17:17573974-17573975(-) m6A CDS       25683224//22608085 chr17:17575362-17575363(-) m6A CDS       25569111 chr17:17578629-17578630(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17578644-17578645(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17578668-17578669(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17578701-17578702(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17578752-17578753(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17578783-17578784(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17578840-17578841(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17578857-17578858(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17578944-17578945(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17578961-17578962(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17579063-17579064(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17579087-17579088(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr17:17579122-17579123(-) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr17:17579143-17579144(-) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr17:17579271-17579272(-) m6A CDS       25683224//25456834//24981863//25412662//25569111 chr17:17579292-17579293(-) m6A CDS       25683224//25456834//24981863//25412662//25569111 chr17:17579338-17579339(-) m6A CDS       25683224//25456834//24981863//25412662//25569111 chr17:17624429-17624430(-) m6A 5'UTR       25683224//24981863//25412662//25569111 chr17:17624478-17624479(-) m6A 5'UTR       25683224//24981863//25412662//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Lnpep	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m59-1
Interactor2: Lnpep

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar