Basic Information:

  VIRBase ID:  

VHID00612283

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:  MIMAT0005548          E130308A19Rik:  NM_001015681     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m59-1	E130308A19Rik
miRBase Accession/Entrez ID	MIMAT0005548	230259
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	E130308A19Rik	chr4:59626469-59626470(+) m6A 5'UTR       25569111 chr4:59626481-59626482(+) m6A 5'UTR       25569111 chr4:59690148-59690149(+) m6A 5'UTR       25569111 chr4:59690236-59690237(+) m6A CDS       25683224//25569111 chr4:59690258-59690259(+) m6A CDS       25683224//25569111 chr4:59690265-59690266(+) m6A CDS       25683224//25569111 chr4:59690294-59690295(+) m6A CDS       25683224//25456834//24981863//25569111 chr4:59690393-59690394(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59690446-59690447(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59690452-59690453(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59690481-59690482(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59690501-59690502(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr4:59690512-59690513(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr4:59690519-59690520(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr4:59690556-59690557(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59690591-59690592(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59690636-59690637(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59690649-59690650(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59690656-59690657(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59690664-59690665(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59690730-59690731(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr4:59690841-59690842(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59690871-59690872(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr4:59690877-59690878(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr4:59690884-59690885(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr4:59690919-59690920(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59690960-59690961(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59691000-59691001(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59691016-59691017(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59691044-59691045(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59691051-59691052(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59691123-59691124(+) m6A CDS       25683224//25456834//24981863//25569111 chr4:59691162-59691163(+) m6A CDS       25683224//24981863//25456834//25569111 chr4:59719965-59719966(+) m6A CDS//exon//intron       25683224//25412662//24981863//25569111 chr4:59719971-59719972(+) m6A CDS//exon//intron       25683224//25412662//24981863//25569111 chr4:59720003-59720004(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111 chr4:59720064-59720065(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59720197-59720198(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59720231-59720232(+) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59720254-59720255(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59720273-59720274(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59720308-59720309(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59720408-59720409(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59720453-59720454(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59720476-59720477(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59720512-59720513(+) m6A CDS//intron       25456834//25412662//24981863//25569111//22608085 chr4:59720672-59720673(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr4:59720701-59720702(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr4:59720730-59720731(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr4:59720868-59720869(+) m6A 3'UTR//intron       25456834//24981863//22608085 chr4:59720914-59720915(+) m6A 3'UTR//intron       24981863//22608085 chr4:59720924-59720925(+) m6A 3'UTR//intron       24981863//22608085 chr4:59720981-59720982(+) m6A 3'UTR//intron       24981863 chr4:59720997-59720998(+) m6A 3'UTR//intron       24981863//25456834 chr4:59721014-59721015(+) m6A 3'UTR//intron       24981863//25456834 chr4:59737714-59737715(+) m6A CDS       25683224 chr4:59737723-59737724(+) m6A CDS       25683224 chr4:59752246-59752247(+) m6A CDS       25683224//24981863 chr4:59752266-59752267(+) m6A CDS       25683224//24981863 chr4:59752302-59752303(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:59752344-59752345(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59752414-59752415(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59752598-59752599(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59752609-59752610(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:59752659-59752660(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59752679-59752680(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59752759-59752760(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr4:59752872-59752873(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr4:59752965-59752966(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59752974-59752975(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59753073-59753074(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:59753133-59753134(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:59753620-59753621(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:59753636-59753637(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:59753681-59753682(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:59753712-59753713(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:59753760-59753761(+) m6A 3'UTR       25683224//24981863//25569111 chr4:59753775-59753776(+) m6A 3'UTR       25683224//24981863 chr4:59753860-59753861(+) m6A 3'UTR       25683224 chr4:59753920-59753921(+) m6A 3'UTR       25683224//24981863 chr4:59753978-59753979(+) m6A 3'UTR       25683224//24981863 chr4:59754005-59754006(+) m6A 3'UTR       25683224//24981863 chr4:59754023-59754024(+) m6A 3'UTR       25683224//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	E130308A19Rik	Cytoplasm Neuroblastoma cell line (N2A)     22406755 Exosome Mast cells     17486113 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m59-1
Interactor2: E130308A19Rik

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar