Detail Information

Basic Information:


  VIRBase ID:  

VHID00611505

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:           Usp42:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m59-1 Usp42
miRBase
Accession/Entrez ID		 MIMAT0005548 76800
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 2410140K03Rik//3110031A07Rik//A630018G05Rik//D5Ertd591//D5Ertd591e

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Usp42
chr5:143710549-143710550(-) m6A 3'UTR       24981863
chr5:143710596-143710597(-) m6A 3'UTR       24981863
chr5:143710779-143710780(-) m6A 3'UTR       24981863//25456834//22608085
chr5:143710789-143710790(-) m6A 3'UTR       24981863//25456834//22608085
chr5:143710806-143710807(-) m6A 3'UTR       24981863//25456834//22608085
chr5:143710859-143710860(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr5:143710896-143710897(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085
chr5:143710914-143710915(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085
chr5:143710926-143710927(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr5:143710957-143710958(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr5:143710968-143710969(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr5:143710975-143710976(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr5:143711000-143711001(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr5:143711046-143711047(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr5:143711073-143711074(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr5:143711128-143711129(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr5:143711224-143711225(-) m6A 3'UTR       25456834//24981863//25569111
chr5:143711270-143711271(-) m6A 3'UTR       25456834//24981863//25569111
chr5:143711293-143711294(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr5:143711327-143711328(-) m6A 3'UTR       24981863//25456834//25569111//22608085
chr5:143711979-143711980(-) m6A 3'UTR       24981863//25569111
chr5:143713618-143713619(-) m6A CDS       25569111
chr5:143713661-143713662(-) m6A CDS       25683224//24981863//25569111
chr5:143713732-143713733(-) m6A CDS       25683224//24981863//25569111
chr5:143713782-143713783(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr5:143714621-143714622(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr5:143714688-143714689(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr5:143714746-143714747(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr5:143714783-143714784(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143714817-143714818(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143714852-143714853(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143714958-143714959(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715081-143715082(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715096-143715097(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715159-143715160(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715237-143715238(-) m6A CDS//exon//intron       25683224//25456834//24981863//25569111//22608085
chr5:143715291-143715292(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715342-143715343(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715363-143715364(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715413-143715414(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715420-143715421(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715479-143715480(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715504-143715505(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715550-143715551(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715606-143715607(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715613-143715614(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715650-143715651(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715726-143715727(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715792-143715793(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715887-143715888(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715912-143715913(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr5:143715964-143715965(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr5:143716047-143716048(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr5:143716075-143716076(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr5:143716140-143716141(-) m6A exon//intron       25683224//25569111
chr5:143716636-143716637(-) m6A CDS//exon       24981863//25569111
chr5:143716794-143716795(-) m6A CDS//exon       25456834//24981863//25569111
chr5:143716807-143716808(-) m6A CDS//exon       25456834//24981863//25569111
chr5:143716864-143716865(-) m6A CDS//exon       25456834//25412662//24981863//25569111//22608085
chr5:143716882-143716883(-) m6A CDS//exon       25456834//25412662//24981863//25569111//22608085
chr5:143716914-143716915(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr5:143716996-143716997(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr5:143717310-143717311(-) m6A CDS//exon       24981863
chr5:143717340-143717341(-) m6A CDS//exon       24981863
chr5:143717356-143717357(-) m6A CDS//exon       24981863
chr5:143717407-143717408(-) m6A CDS//exon       24981863
chr5:143717950-143717951(-) m6A CDS//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Usp42
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m59-1
Interactor2: Usp42

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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