Basic Information:

  VIRBase ID:  

VHID00611276

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:  MIMAT0005548          Scaf11:  NM_028148     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m59-1	Scaf11
miRBase Accession/Entrez ID	MIMAT0005548	72193
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	1110061H03Rik//2610510E10Rik//AI462454//CAS//CASP11//mKIAA3013//S//Sf//Sfrs2ip//SIP1//Sr//SRR//SRRP129//Srsf2ip

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Scaf11	chr15:96413331-96413332(-) m6A 3'UTR       24981863 chr15:96413407-96413408(-) m6A 3'UTR       24981863 chr15:96413413-96413414(-) m6A 3'UTR       24981863 chr15:96413421-96413422(-) m6A 3'UTR       24981863 chr15:96414363-96414364(-) m6A 3'UTR       25569111 chr15:96414369-96414370(-) m6A 3'UTR       25569111 chr15:96414392-96414393(-) m6A 3'UTR       25569111 chr15:96414483-96414484(-) m6A 3'UTR       25683224//24981863//25569111 chr15:96414499-96414500(-) m6A 3'UTR       25683224//24981863//25569111 chr15:96414506-96414507(-) m6A 3'UTR       25683224//24981863//25569111 chr15:96414575-96414576(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr15:96414591-96414592(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr15:96414602-96414603(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr15:96414742-96414743(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:96414763-96414764(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr15:96414792-96414793(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:96414811-96414812(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:96414848-96414849(-) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr15:96414887-96414888(-) m6A CDS       25683224//25456834//24981863//25569111 chr15:96415035-96415036(-) m6A CDS       25683224//24981863//25569111 chr15:96415080-96415081(-) m6A CDS       25683224//24981863//25569111 chr15:96415112-96415113(-) m6A CDS       24981863//25569111 chr15:96416926-96416927(-) m6A CDS       24981863//22608085 chr15:96417017-96417018(-) m6A CDS       24981863//22608085 chr15:96417134-96417135(-) m6A CDS       24981863//25569111 chr15:96417168-96417169(-) m6A CDS       25683224//24981863//25569111 chr15:96417173-96417174(-) m6A CDS       25683224//25412662//24981863//25569111 chr15:96418083-96418084(-) m6A CDS       25683224//25412662//24981863//25569111 chr15:96418096-96418097(-) m6A CDS       25683224//25412662//24981863//25569111 chr15:96418127-96418128(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr15:96418173-96418174(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr15:96418217-96418218(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr15:96418328-96418329(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:96418421-96418422(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:96418428-96418429(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:96418457-96418458(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:96418500-96418501(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:96418520-96418521(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:96418633-96418634(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr15:96418695-96418696(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr15:96418767-96418768(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr15:96418835-96418836(-) m6A CDS       25683224//25412662//24981863//25569111 chr15:96418940-96418941(-) m6A CDS       25683224//25412662//24981863//25569111 chr15:96419139-96419140(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr15:96419292-96419293(-) m6A CDS       25569111//22608085 chr15:96419330-96419331(-) m6A CDS       25569111 chr15:96419368-96419369(-) m6A CDS       24981863//25569111 chr15:96419473-96419474(-) m6A CDS       24981863//25569111 chr15:96419524-96419525(-) m6A CDS       24981863//25569111 chr15:96419587-96419588(-) m6A CDS       24981863//25569111 chr15:96419676-96419677(-) m6A CDS       25456834//24981863//25569111//22608085 chr15:96419718-96419719(-) m6A CDS       25456834//24981863//25569111//22608085 chr15:96419728-96419729(-) m6A CDS       25456834//24981863//25569111//22608085 chr15:96419760-96419761(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:96419786-96419787(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:96419810-96419811(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:96419815-96419816(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:96419826-96419827(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:96419876-96419877(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr15:96419928-96419929(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:96420046-96420047(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr15:96420151-96420152(-) m6A CDS       24981863//25569111 chr15:96420200-96420201(-) m6A CDS       25412662//24981863//25569111 chr15:96420257-96420258(-) m6A CDS       25412662//24981863//25569111 chr15:96420291-96420292(-) m6A CDS       25412662//24981863//25569111 chr15:96420322-96420323(-) m6A CDS       25412662//24981863//25456834//25569111 chr15:96420340-96420341(-) m6A CDS       25412662//24981863//25456834//25569111//22608085 chr15:96420381-96420382(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr15:96420455-96420456(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr15:96420462-96420463(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr15:96420520-96420521(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr15:96420541-96420542(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr15:96420580-96420581(-) m6A CDS       25456834//24981863//25569111//22608085 chr15:96420585-96420586(-) m6A CDS       25456834//24981863//25569111//22608085 chr15:96420662-96420663(-) m6A CDS       24981863//25412662//25569111 chr15:96420696-96420697(-) m6A CDS       24981863//25412662//25569111 chr15:96420710-96420711(-) m6A CDS       24981863//25412662//25569111 chr15:96420748-96420749(-) m6A CDS       24981863//25569111 chr15:96420770-96420771(-) m6A CDS       24981863//25569111 chr15:96420786-96420787(-) m6A CDS       24981863//25569111 chr15:96424592-96424593(-) m6A CDS       - chr15:96424836-96424837(-) m6A CDS       24981863 chr15:96424871-96424872(-) m6A CDS       24981863 chr15:96424880-96424881(-) m6A CDS       24981863 chr15:96431836-96431837(-) m6A CDS       25412662//24981863 chr15:96432389-96432390(-) m6A CDS       25412662//22608085 chr15:96432396-96432397(-) m6A CDS       25412662//22608085 chr15:96434946-96434947(-) m6A CDS       25412662//22608085 chr15:96434967-96434968(-) m6A CDS       25412662//22608085 chr15:96446563-96446564(-) m1A CDS       26863196 chr15:96460613-96460614(-) m6A 5'UTR       25569111 chr15:96460644-96460645(-) m6A 5'UTR       25412662//25569111 chr15:96460654-96460655(-) m6A 5'UTR       25412662//25569111 chr15:96460666-96460667(-) m6A 5'UTR       25412662//25569111 chr15:96460830-96460831(-) m6A 5'UTR       25412662//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Scaf11	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m59-1
Interactor2: Scaf11

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar