Basic Information:

  VIRBase ID:  

VHID00609777

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:  MIMAT0005548          Lpar1:  NM_001290486     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m59-1	Lpar1
miRBase Accession/Entrez ID	MIMAT0005548	14745
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	AI326300//Edg2//Gpcr//Gpcr26//Kdt2//L//lpA1//vzg-//vzg-1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Lpar1	chr4:58435285-58435286(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:58435315-58435316(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58435351-58435352(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58435357-58435358(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58435421-58435422(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:58435492-58435493(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:58435616-58435617(-) m6A 3'UTR       25683224//24981863 chr4:58435646-58435647(-) m6A 3'UTR       25683224//24981863 chr4:58435686-58435687(-) m6A 3'UTR       24981863 chr4:58435787-58435788(-) m6A 3'UTR       24981863 chr4:58436335-58436336(-) m6A 3'UTR       24981863 chr4:58436425-58436426(-) m6A 3'UTR       24981863//25456834 chr4:58436441-58436442(-) m6A 3'UTR       24981863//25456834 chr4:58436500-58436501(-) m6A 3'UTR       24981863 chr4:58436902-58436903(-) m6A 3'UTR       24981863 chr4:58436910-58436911(-) m6A 3'UTR       24981863//22608085 chr4:58436976-58436977(-) m6A 3'UTR       25456834//24981863//25569111//22608085 chr4:58437072-58437073(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58437106-58437107(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58437134-58437135(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58437144-58437145(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58437191-58437192(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58437200-58437201(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58437245-58437246(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58437299-58437300(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58437429-58437430(-) m6A CDS       25683224//25412662//24981863//25569111 chr4:58437507-58437508(-) m6A CDS       25683224//24981863//25569111 chr4:58437613-58437614(-) m6A CDS       25683224//24981863//25569111 chr4:58486494-58486495(-) m6A CDS       25683224//24981863//25569111 chr4:58486517-58486518(-) m6A CDS       25683224//24981863//25569111 chr4:58486534-58486535(-) m6A CDS       25683224//24981863//25569111 chr4:58486563-58486564(-) m6A CDS       25683224//24981863//25569111 chr4:58486709-58486710(-) m6A CDS       25683224//24981863//25569111//22608085 chr4:58486752-58486753(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:58486924-58486925(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58486939-58486940(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:58486985-58486986(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:58487107-58487108(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:58487132-58487133(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:58487206-58487207(-) m6A CDS       25683224//24981863//25569111//22608085 chr4:58499352-58499353(-) m6A 5'UTR//intron       25569111 chr4:58499385-58499386(-) m6A 5'UTR//intron       - chr4:58504679-58504680(-) m6A 5'UTR       25569111 chr4:58543823-58543824(-) m6A 5'UTR//intron       25412662//24981863 chr4:58543861-58543862(-) m6A 5'UTR//intron       25412662 chr4:58548383-58548384(-) m6A 5'UTR//intron       24981863//25569111 chr4:58553192-58553193(-) m6A 5'UTR//intron       25412662//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Lpar1	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m59-1
Interactor2: Lpar1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar