Basic Information:

  VIRBase ID:  

VHID00609403

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m59-1:  MIMAT0005548          Snhg11:  NR_164123     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m59-1	Snhg11
miRBase Accession/Entrez ID	MIMAT0005548	319317
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	lncRNA
Alias	-	A930034L06Rik//AI854265//AL022637//AW319638//E130013N09Rik

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Snhg11	chr2:158209915(+) A-I      3'UTR chr2:158210689(+) A-I      3'UTR chr2:158204722(+) A-I      intronic chr2:158209361(+) A-I      3'UTR chr2:158209687(+) A-I      3'UTR chr2:158203242(+) A-I      intronic chr2:158204714(+) A-I      intronic chr2:158204654(+) A-I      intronic chr2:158204721(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Snhg11	chr2:158378918(+) A-I intron -    22524474 chr2:158378978(+) A-I intron -    22524474 chr2:158378985(+) A-I intron -    22524474 chr2:158378986(+) A-I intron -    22524474 chr2:158383625(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Snhg11	chr2:158375773-158375774(+) m6A 5'UTR//exon       25683224//24981863//25569111//22608085 chr2:158375799-158375800(+) m6A 5'UTR//exon       25683224//24981863//25569111//22608085 chr2:158375857-158375858(+) m6A 5'UTR//exon       25683224//24981863//25569111//22608085 chr2:158376089-158376090(+) m6A 5'UTR//exon       25683224//24981863 chr2:158376127-158376128(+) m6A 5'UTR//exon       25683224//24981863//22608085 chr2:158376148-158376149(+) m6A 5'UTR//exon       25683224//24981863//22608085 chr2:158376173-158376174(+) m6A 5'UTR//exon       25683224//24981863//22608085 chr2:158376248-158376249(+) m6A CDS//exon       24981863//22608085 chr2:158381824-158381825(+) m6A 3'UTR       26404942//22608085 chr2:158382513-158382514(+) m6A 3'UTR       25683224//22608085 chr2:158382722-158382723(+) m6A 3'UTR       26404942//22608085 chr2:158382727-158382728(+) m6A 3'UTR       26404942//22608085 chr2:158382763-158382764(+) m6A 3'UTR       26404942//22608085 chr2:158382794-158382795(+) m6A 3'UTR       24981863//26404942 chr2:158382826-158382827(+) m6A 3'UTR       24981863//26404942 chr2:158382860-158382861(+) m6A 3'UTR       24981863//26404942 chr2:158382902-158382903(+) m6A 3'UTR       24981863//26404942 chr2:158382910-158382911(+) m6A 3'UTR       24981863//26404942 chr2:158383563-158383564(+) m6A 3'UTR       24981863//22608085 chr2:158384698-158384699(+) m6A 3'UTR       26404942//22608085 chr2:158384717-158384718(+) m6A 3'UTR       26404942//22608085 chr2:158384729-158384730(+) m6A 3'UTR       26404942//22608085 chr2:158384795-158384796(+) m6A 3'UTR       26404942//22608085 chr2:158385311-158385312(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr2:158385317-158385318(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr2:158385331-158385332(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr2:158385339-158385340(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr2:158385368-158385369(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr2:158385396-158385397(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr2:158385421-158385422(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr2:158385441-158385442(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr2:158385461-158385462(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr2:158385593-158385594(+) m6A 3'UTR       25456834//24981863//25569111//26404942//22608085 chr2:158385644-158385645(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr2:158385677-158385678(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr2:158385685-158385686(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr2:158385713-158385714(+) m6A 3'UTR       24981863//25569111//26404942//22608085 chr2:158385763-158385764(+) m6A 3'UTR       24981863//26404942

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m59-1
Interactor2: Snhg11

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar