Basic Information:

  VIRBase ID:  

VHID00609180

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M44-1:  MIMAT0005546          Slc35e2:  NM_177186     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M44-1	Slc35e2
miRBase Accession/Entrez ID	MIMAT0005546	320541
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	A530082C11Rik//AI957035//Slc35e2a

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Slc35e2	chr4:154996013(+) A-I      3'UTR chr4:154995217(+) A-I      3'UTR chr4:154996006(+) A-I      3'UTR chr4:154985308(+) A-I      intronic chr4:154996012(+) A-I      3'UTR chr4:154996025(+) A-I      3'UTR chr4:154996074(+) A-I      3'UTR chr4:154982133(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Slc35e2	chr4:155621904(+) C-I intron -    22448268 chr4:155608024(+) A-I intron -    22524474 chr4:155611199(+) A-I intron -    22524474 chr4:155621108(+) A-I intron -    22524474 chr4:155621897(+) A-I intron -    22524474 chr4:155621903(+) A-I intron -    22524474 chr4:155621904(+) A-I intron -    22524474 chr4:155621916(+) A-I intron -    22524474 chr4:155621965(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Slc35e2	chr4:155601630-155601631(+) m6A 5'UTR       25412662//24981863//25569111 chr4:155601964-155601965(+) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111 chr4:155602044-155602045(+) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111 chr4:155602064-155602065(+) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111 chr4:155602069-155602070(+) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111 chr4:155609863-155609864(+) m6A 5'UTR       25683224//25412662//24981863//25569111 chr4:155609893-155609894(+) m6A 5'UTR       25683224//25412662//24981863//25569111 chr4:155609899-155609900(+) m6A 5'UTR       25683224//25412662//24981863//25569111 chr4:155610069-155610070(+) m6A CDS       25683224//25412662//24981863//25569111 chr4:155610177-155610178(+) m6A CDS       25683224//25412662//24981863//25569111 chr4:155612641-155612642(+) Y CDS//exon       26075521 chr4:155616243-155616244(+) m6A CDS//intron       25683224//22608085 chr4:155617663-155617664(+) m6A CDS//intron       25683224//22608085 chr4:155618570-155618571(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr4:155618659-155618660(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr4:155618693-155618694(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr4:155618729-155618730(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr4:155618736-155618737(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr4:155618857-155618858(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:155618888-155618889(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:155618923-155618924(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:155619013-155619014(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:155619019-155619020(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:155619090-155619091(+) m6A 3'UTR//exon       25683224//25456834//24981863//25412662//25569111//22608085//22575960 chr4:155619133-155619134(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960 chr4:155619156-155619157(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960 chr4:155619180-155619181(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960 chr4:155619231-155619232(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr4:155619482-155619483(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:155619636-155619637(+) m6A 3'UTR       25456834//24981863//25569111//22608085 chr4:155619734-155619735(+) m6A 3'UTR       24981863 chr4:155620090-155620091(+) m6A 3'UTR       25683224//24981863 chr4:155620122-155620123(+) m6A 3'UTR       25683224//24981863 chr4:155620217-155620218(+) m6A 3'UTR       25683224 chr4:155620498-155620499(+) m6A 3'UTR       24981863

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M44-1
Interactor2: Slc35e2

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar