Detail Information

Basic Information:


  VIRBase ID:  

VHID00608647

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M44-1:           Atxn3:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-M44-1 Atxn3
miRBase
Accession/Entrez ID		 MIMAT0005546 110616
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 2210008M02Rik//AI463012//AI647473//atax//ataxin-3//Atx//ATX3//Mjd//MJD1//Sc//Sca3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Atxn3
chr12:103158082(-) A-I      3'UTR
chr12:103159841(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Atxn3
chr12:101919872(-) A-I exon 3'UTR    22524474
chr12:101921631(-) A-I exon 3'UTR    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Atxn3
chr12:101918984-101918985(-) m6A 3'UTR       25683224//25456834
chr12:101919090-101919091(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr12:101919170-101919171(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr12:101919198-101919199(-) m6A 3'UTR       25683224//25456834//24981863
chr12:101919233-101919234(-) m6A 3'UTR       25456834//24981863
chr12:101919275-101919276(-) m6A 3'UTR       25456834//24981863
chr12:101919348-101919349(-) m6A 3'UTR       25456834
chr12:101922280-101922281(-) Y 3'UTR//exon       26075521
chr12:101922909-101922910(-) m6A 3'UTR       24981863//25456834
chr12:101922960-101922961(-) m6A 3'UTR       24981863//25456834
chr12:101923005-101923006(-) m6A 3'UTR       24981863//25456834
chr12:101923179-101923180(-) m6A 3'UTR//CDS       25412662
chr12:101926520-101926521(-) m6A 3'UTR//CDS       25412662
chr12:101926544-101926545(-) m6A 3'UTR//CDS       25412662
chr12:101926554-101926555(-) m6A 3'UTR//CDS       25412662
chr12:101958158-101958159(-) m6A 5'UTR       24981863
chr12:101958166-101958167(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Atxn3
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-M44-1
Interactor2: Atxn3

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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