Basic Information:

  VIRBase ID:  

VHID00608641

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M44-1:  MIMAT0005546          Itga1:  NM_001033228     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M44-1	Itga1
miRBase Accession/Entrez ID	MIMAT0005546	109700
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	CD49//CD49A//E130012M19Rik//V//Vla1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Itga1	chr13:114959569-114959570(-) m6A 3'UTR       25683224//24981863 chr13:114959601-114959602(-) m6A 3'UTR       25683224//24981863 chr13:114959933-114959934(-) m6A 3'UTR       25683224//24981863//25569111//22608085 chr13:114960071-114960072(-) m6A 3'UTR       24981863 chr13:115031153-115031154(-) m6A CDS       25683224//22608085 chr13:115088396-115088397(-) m6A intron       25683224//25456834//24981863//25569111 chr13:115088527-115088528(-) m6A intron       25683224//25456834//24981863//25569111//22608085//22575960 chr13:115088571-115088572(-) m6A intron       25683224//25456834//24981863//25569111//22608085//22575960 chr13:115088625-115088626(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr13:115088686-115088687(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr13:115088761-115088762(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr13:115088802-115088803(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr13:115088884-115088885(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr13:115088943-115088944(-) m6A intron       25683224//25456834//25412662//24981863//25569111 chr13:115089212-115089213(-) m6A intron       25683224//24981863//25569111 chr13:115089233-115089234(-) m6A intron       25683224//24981863//25569111 chr13:115089326-115089327(-) m6A intron       25683224//25412662//24981863//25569111 chr13:115089358-115089359(-) m6A intron       25683224//25456834//25412662//24981863//25569111 chr13:115089422-115089423(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:115089566-115089567(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr13:115089574-115089575(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr13:115089610-115089611(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr13:115089663-115089664(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr13:115089774-115089775(-) m6A intron       25683224//25456834//25412662//24981863//25569111 chr13:115089845-115089846(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22575960 chr13:115089887-115089888(-) m6A intron       25683224//25456834//25412662//24981863//25569111//22575960 chr13:115089938-115089939(-) m6A intron       25683224//25456834//25412662//24981863//25569111 chr13:115089972-115089973(-) m6A intron       25683224//25456834//25412662//24981863//25569111 chr13:115090088-115090089(-) m6A intron       25683224//25412662//24981863//25569111 chr13:115101566-115101567(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:115101640-115101641(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:115101652-115101653(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:115101711-115101712(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:115101794-115101795(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:115101829-115101830(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:115101870-115101871(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:115101882-115101883(-) m6A 5'UTR       25683224//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Itga1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M44-1
Interactor2: Itga1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar