Basic Information:

  VIRBase ID:  

VHID00607647

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M44-1:  MIMAT0005546          Rxra:  NM_001290482     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M44-1	Rxra
miRBase Accession/Entrez ID	MIMAT0005546	20181
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	9530071D11Rik//Nr2b1//RXR//RXRalpha1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rxra	chr2:27677430-27677431(+) m6A 5'UTR//intron       25412662 chr2:27677436-27677437(+) m6A CDS//intron       25412662 chr2:27677443-27677444(+) m6A CDS//intron       25412662 chr2:27710691-27710692(+) m6A 5'UTR//intron       25412662//22575960 chr2:27737316-27737317(+) m6A 5'UTR//CDS       25412662//22575960 chr2:27741816-27741817(+) m6A CDS//exon       25412662//24981863//25569111 chr2:27741829-27741830(+) m6A CDS//exon       25412662//24981863//25569111 chr2:27741850-27741851(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr2:27741859-27741860(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr2:27741878-27741879(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr2:27741886-27741887(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr2:27748641-27748642(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr2:27748686-27748687(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:27748736-27748737(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:27748742-27748743(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:27748758-27748759(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:27748770-27748771(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:27752348-27752349(+) m6A CDS       25412662//25569111 chr2:27754315-27754316(+) m6A CDS       25412662 chr2:27756242-27756243(+) m6A CDS       25412662 chr2:27759629-27759630(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:27759726-27759727(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22575960 chr2:27760231-27760232(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr2:27760468-27760469(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27760539-27760540(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27760551-27760552(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27760611-27760612(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27760635-27760636(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27760664-27760665(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27760670-27760671(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27760680-27760681(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27760708-27760709(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27760771-27760772(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr2:27760883-27760884(+) m6A 3'UTR       24981863//25569111//22575960 chr2:27760990-27760991(+) m6A 3'UTR       25412662//24981863//25569111 chr2:27761011-27761012(+) m6A 3'UTR       25412662//24981863//25569111 chr2:27761063-27761064(+) m6A 3'UTR       25412662//24981863//25569111//26404942 chr2:27761096-27761097(+) m6A 3'UTR       25412662//24981863//25569111 chr2:27761134-27761135(+) m6A 3'UTR       25412662//24981863//25569111 chr2:27761189-27761190(+) m6A 3'UTR       25412662//24981863 chr2:27761206-27761207(+) m6A 3'UTR       25412662//24981863 chr2:27761324-27761325(+) m6A 3'UTR       25412662//24981863 chr2:27761721-27761722(+) m6A 3'UTR       24981863 chr2:27761963-27761964(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22575960 chr2:27762055-27762056(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762087-27762088(+) Y 3'UTR//exon       26075521 chr2:27762141-27762142(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762186-27762187(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762205-27762206(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762268-27762269(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762309-27762310(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762348-27762349(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27762407-27762408(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27762552-27762553(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762572-27762573(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762603-27762604(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762612-27762613(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762628-27762629(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27762669-27762670(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27762678-27762679(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27762746-27762747(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr2:27762806-27762807(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27762822-27762823(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27762835-27762836(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27762867-27762868(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:27762895-27762896(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr2:27762915-27762916(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M44-1
Interactor2: Rxra

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar