Basic Information:

  VIRBase ID:  

VHID00607592

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M44-1:  MIMAT0005546          Pkd2:  NM_008861     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M44-1	Pkd2
miRBase Accession/Entrez ID	MIMAT0005546	18764
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	C030034P18Rik//PC//PC2//TR//TRPP2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Pkd2	chr5:104933377(+) A-I      3'UTR chr5:104933996(+) A-I      3'UTR chr5:104933998(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Pkd2	chr5:104504977(+) A-I intron -    22524474 chr5:104504979(+) A-I intron -    22524474 chr5:104504358(+) A-I intron -    16940548

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Pkd2	chr5:104459575-104459576(+) m6A 5'UTR//exon       25456834//25412662//24981863//25569111 chr5:104459710-104459711(+) m6A CDS//exon       25412662//24981863//25569111 chr5:104459949-104459950(+) m1A CDS//exon       26863196 chr5:104460105-104460106(+) m6A CDS//exon       25412662//24981863//25569111 chr5:104460144-104460145(+) m6A CDS//exon       25412662//24981863//25569111 chr5:104466893-104466894(+) m6A CDS//exon       25412662//24981863//25569111 chr5:104466898-104466899(+) m6A CDS//exon       25412662//24981863//25569111 chr5:104477125-104477126(+) m6A CDS//exon       25683224//22608085 chr5:104477134-104477135(+) m6A CDS//exon       25683224//22608085 chr5:104477146-104477147(+) m6A CDS//exon       25683224//22608085 chr5:104477165-104477166(+) m6A CDS//exon       25683224//22608085 chr5:104478835-104478836(+) m6A CDS//exon       25683224//22608085 chr5:104478884-104478885(+) m6A CDS//exon       25683224//22608085 chr5:104478953-104478954(+) m6A CDS//exon       25683224//25569111//22608085 chr5:104479007-104479008(+) m6A CDS//exon       25683224//24981863//25569111//22608085 chr5:104479023-104479024(+) m6A CDS//exon       25683224//24981863//25569111//22608085 chr5:104479036-104479037(+) m6A CDS//exon       25683224//24981863//25569111//22608085 chr5:104480246-104480247(+) m6A CDS//exon       25683224//24981863//25569111 chr5:104480258-104480259(+) m6A CDS//exon       25683224//24981863//25569111 chr5:104480289-104480290(+) m6A CDS//exon       25683224//25569111 chr5:104480301-104480302(+) m6A CDS//exon       25683224//25569111 chr5:104480328-104480329(+) m6A CDS//exon       25683224//25569111 chr5:104480349-104480350(+) m6A CDS//exon       25683224//25569111//22608085 chr5:104494888-104494889(+) m6A exon//intron       25412662 chr5:104494969-104494970(+) m6A CDS//exon       25412662//22608085 chr5:104494977-104494978(+) m6A CDS//exon       25412662//22608085 chr5:104498463-104498464(+) m6A CDS//exon       25412662//22608085 chr5:104498469-104498470(+) m6A CDS//exon       25412662//22608085 chr5:104498480-104498481(+) m6A CDS//exon       25412662//22608085 chr5:104498823-104498824(+) m6A CDS//exon       25683224//25412662//24981863 chr5:104499153-104499154(+) m6A exon//intron       25412662 chr5:104499173-104499174(+) m6A CDS//exon       25412662//24981863 chr5:104499179-104499180(+) m6A CDS//exon       25412662//24981863 chr5:104499186-104499187(+) m6A CDS//exon       25412662//24981863 chr5:104499266-104499267(+) m6A CDS//exon       25412662//24981863//22608085 chr5:104501288-104501289(+) m6A exon//intron       25412662 chr5:104502308-104502309(+) m6A CDS       25683224//25412662//24981863 chr5:104503470-104503471(+) m6A CDS       25683224//25412662//24981863//25569111 chr5:104503553-104503554(+) m6A CDS       25683224//25412662//24981863//25569111 chr5:104503582-104503583(+) m6A CDS       25683224//25412662//24981863//25569111 chr5:104503608-104503609(+) m6A CDS       25683224//25412662//24981863//25569111 chr5:104503929-104503930(+) m6A 3'UTR       25569111//22608085 chr5:104504072-104504073(+) m6A 3'UTR       25569111//22608085 chr5:104505137-104505138(+) m6A 3'UTR       25569111//22608085 chr5:104505173-104505174(+) m6A 3'UTR       24981863//25569111 chr5:104505250-104505251(+) m6A 3'UTR       24981863//25569111 chr5:104505270-104505271(+) m6A 3'UTR       24981863//25569111 chr5:104505282-104505283(+) m6A 3'UTR       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Pkd2	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M44-1
Interactor2: Pkd2

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar