Detail Information

Basic Information:


  VIRBase ID:  

VHID00607544

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M44-1:           Ncl:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-M44-1 Ncl
miRBase
Accession/Entrez ID		 MIMAT0005546 17975
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - B530004O11Rik//C23//D0Nds28//D1Nds28//Nucl

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Ncl
chr1:88241814(-) A-I      3'UTR
chr1:88242505(-) A-I      3'UTR
chr1:88245389(-) A-I      3'UTR
chr1:88245381(-) A-I      3'UTR
chr1:88244312(-) A-I      3'UTR
chr1:88244542(-) A-I      3'UTR
chr1:88242491(-) A-I      3'UTR
chr1:88246680(-) A-I      3'UTR
chr1:88242486(-) A-I      3'UTR
chr1:88244311(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Ncl
chr1:86345911(-) A-I exon 3'UTR    22524474   //16940548
chr1:86345916(-) A-I exon 3'UTR    22524474
chr1:86345930(-) A-I exon 3'UTR    22524474   //16940548
chr1:86347736(-) A-I exon 3'UTR    22524474
chr1:86347737(-) A-I exon 3'UTR    22524474
chr1:86347967(-) A-I exon 3'UTR    22524474   //16940548
chr1:86348806(-) A-I exon 3'UTR    22524474
chr1:86348814(-) A-I exon 3'UTR    22524474
chr1:86350105(-) A-I exon 3'UTR    22524474
chr1:86345239(-) A-I exon 3'UTR    16940548

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Ncl
chr1:86345279-86345280(-) m6A 3'UTR       25683224
chr1:86345286-86345287(-) m6A 3'UTR       25683224
chr1:86345475-86345476(-) Y 3'UTR//exon       26075521
chr1:86347012-86347013(-) m6A 3'UTR       24981863//22608085
chr1:86347027-86347028(-) m6A 3'UTR       25683224//24981863//22608085
chr1:86347053-86347054(-) m6A 3'UTR       25683224//24981863//22608085
chr1:86347094-86347095(-) m6A 3'UTR       25683224//24981863//22608085
chr1:86347129-86347130(-) m6A 3'UTR       25683224//24981863
chr1:86347199-86347200(-) m6A 3'UTR       25683224
chr1:86347462-86347463(-) m6A 3'UTR       22608085
chr1:86347492-86347493(-) m6A 3'UTR       22608085
chr1:86347587-86347588(-) m6A 3'UTR       -
chr1:86347693-86347694(-) m6A 3'UTR       -
chr1:86347704-86347705(-) m6A 3'UTR       -
chr1:86347726-86347727(-) m6A 3'UTR       -
chr1:86347783-86347784(-) m6A 3'UTR       -
chr1:86347890-86347891(-) m6A 3'UTR       -
chr1:86348917-86348918(-) m6A 3'UTR       22608085
chr1:86348970-86348971(-) m6A 3'UTR       22608085
chr1:86349032-86349033(-) m6A 3'UTR       -
chr1:86349052-86349053(-) m6A 3'UTR       -
chr1:86349116-86349117(-) m6A 3'UTR       -
chr1:86349140-86349141(-) m6A 3'UTR       -
chr1:86349181-86349182(-) m6A 3'UTR       -
chr1:86349190-86349191(-) m6A 3'UTR       -
chr1:86349238-86349239(-) m6A 3'UTR       -
chr1:86349356-86349357(-) m6A 3'UTR       22608085
chr1:86349476-86349477(-) m6A 3'UTR       22608085
chr1:86349501-86349502(-) m6A 3'UTR       22608085
chr1:86349518-86349519(-) m6A 3'UTR       -
chr1:86349790-86349791(-) m6A 3'UTR       24981863
chr1:86349795-86349796(-) m6A 3'UTR       24981863
chr1:86349815-86349816(-) m6A 3'UTR       24981863
chr1:86349971-86349972(-) m6A 3'UTR       -
chr1:86349980-86349981(-) m6A 3'UTR       -
chr1:86349993-86349994(-) m6A 3'UTR       -
chr1:86350009-86350010(-) m6A 3'UTR       -
chr1:86350037-86350038(-) m6A 3'UTR       25683224
chr1:86350167-86350168(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr1:86350196-86350197(-) m6A 3'UTR       -
chr1:86350200-86350201(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr1:86350351-86350352(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr1:86350434-86350435(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr1:86350487-86350488(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr1:86350500-86350501(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr1:86350516-86350517(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr1:86350526-86350527(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr1:86350576-86350577(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:86350656-86350657(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:86350929-86350930(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr1:86350939-86350940(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr1:86350954-86350955(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr1:86351020-86351021(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr1:86351173-86351174(-) m6A exon//intron       -
chr1:86351224-86351225(-) m6A exon//intron       -
chr1:86351315-86351316(-) m6A exon//intron       -
chr1:86351382-86351383(-) m6A CDS//exon       22608085
chr1:86351439-86351440(-) m6A CDS//exon       25569111//22608085
chr1:86351481-86351482(-) m6A CDS//exon       25569111//22608085
chr1:86351491-86351492(-) m6A CDS//exon       25569111//22608085
chr1:86351513-86351514(-) m6A exon//intron       25569111
chr1:86352236-86352237(-) m6A CDS//exon       25683224//24981863//22608085
chr1:86352337-86352338(-) m6A exon//intron       25683224//24981863//22608085
chr1:86352423-86352424(-) m6A exon//intron       25683224//24981863
chr1:86352447-86352448(-) m6A exon//intron       -
chr1:86352476-86352477(-) m6A exon//intron       25412662//24981863
chr1:86352517-86352518(-) m6A CDS//exon       25412662//24981863
chr1:86352530-86352531(-) m6A CDS//exon       25412662//24981863//22608085
chr1:86352579-86352580(-) m6A CDS//exon       25683224//25412662//24981863//22608085
chr1:86352621-86352622(-) m6A CDS//exon       25683224//25412662//24981863//22608085
chr1:86352678-86352679(-) m6A exon//intron       25683224//25412662//24981863
chr1:86352725-86352726(-) m6A exon//intron       25683224//24981863
chr1:86353094-86353095(-) m6A exon//intron       25412662//24981863
chr1:86353140-86353141(-) m6A CDS//exon       25412662//24981863
chr1:86353149-86353150(-) m6A CDS//exon       25412662//24981863
chr1:86353824-86353825(-) m6A CDS//exon       25412662//24981863//22608085
chr1:86353840-86353841(-) m6A CDS//exon       25412662//24981863//22608085
chr1:86355044-86355045(-) m6A CDS//exon       25412662//22608085
chr1:86355053-86355054(-) m6A CDS//exon       25412662//22608085
chr1:86355108-86355109(-) m6A CDS//exon       25683224//25412662//22608085
chr1:86355126-86355127(-) m6A CDS//exon       25683224//25412662//22608085
chr1:86356064-86356065(-) m6A CDS//exon       22608085
chr1:86356104-86356105(-) m6A CDS//exon       22608085
chr1:86356141-86356142(-) m6A CDS//exon       24981863//25569111//22608085
chr1:86356153-86356154(-) m6A CDS//exon       25412662//24981863//25569111
chr1:86356185-86356186(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111
chr1:86356292-86356293(-) m6A intron       24981863//26404942
chr1:86356302-86356303(-) Y intron       26075521
chr1:86356304-86356305(-) m6A intron       24981863//26404942
chr1:86356383-86356384(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111
chr1:86356424-86356425(-) m1A CDS//exon       26863196
chr1:86356566-86356567(-) m1A CDS//exon       26863196
chr1:86356693-86356694(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111
chr1:86356728-86356729(-) m1A CDS//exon       26863196
chr1:86357156-86357157(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111
chr1:86357297-86357298(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr1:86357382-86357383(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr1:86358213-86358214(-) m6A 5'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr1:86358658-86358659(-) m6A 5'UTR//intron       25683224//25412662//24981863//25569111
chr1:86358669-86358670(-) m6A 5'UTR//intron       25683224//25412662//24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Ncl
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-M44-1
Interactor2: Ncl

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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