Basic Information:

  VIRBase ID:  

VHID00607012

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M23-2-3p:  MIMAT0005545          Col27a1:  NM_025685     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M23-2-3p	Col27a1
miRBase Accession/Entrez ID	MIMAT0005545	373864
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	5730512J02Rik//AI449266

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Col27a1	chr4:63214399-63214400(+) m6A exon       25412662 chr4:63215498-63215499(+) m6A 5'UTR//exon//intron       25412662 chr4:63215623-63215624(+) m6A 5'UTR//exon//intron       25412662//24981863 chr4:63215697-63215698(+) m6A 5'UTR//exon//intron       25412662 chr4:63215872-63215873(+) m6A CDS//exon//intron       25412662 chr4:63224407-63224408(+) m6A CDS//exon       25412662//25569111 chr4:63224441-63224442(+) m6A CDS//exon       25412662//25569111 chr4:63224641-63224642(+) m6A CDS//exon       25412662//25569111 chr4:63224686-63224687(+) m6A CDS//exon       25412662//25569111 chr4:63224797-63224798(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63224820-63224821(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63224836-63224837(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63224867-63224868(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63224901-63224902(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63224985-63224986(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63225008-63225009(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63225024-63225025(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63225044-63225045(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:63225060-63225061(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:63225134-63225135(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:63225234-63225235(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:63225348-63225349(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:63225519-63225520(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63225561-63225562(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr4:63225672-63225673(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:63225684-63225685(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:63225689-63225690(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:63225716-63225717(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:63225760-63225761(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:63225925-63225926(+) m6A CDS//exon       25412662 chr4:63234291-63234292(+) m6A 5'UTR//intron       25412662 chr4:63234364-63234365(+) m6A 5'UTR//intron       25412662 chr4:63234429-63234430(+) m6A 5'UTR//intron       25412662 chr4:63234469-63234470(+) m6A CDS//intron       25412662 chr4:63235351-63235352(+) m6A CDS//exon       25412662//24981863 chr4:63243996-63243997(+) m6A CDS//exon       25412662//24981863 chr4:63244007-63244008(+) m6A CDS//exon       25412662//24981863 chr4:63244014-63244015(+) m6A CDS//exon       25412662//24981863 chr4:63244026-63244027(+) m6A CDS//exon       25412662//24981863 chr4:63245106-63245107(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63253645-63253646(+) m6A CDS//exon       25683224//25412662 chr4:63253684-63253685(+) m6A CDS//exon       25683224//25412662 chr4:63254299-63254300(+) m6A CDS//exon       25683224//25412662 chr4:63254707-63254708(+) m6A CDS//exon       25683224//25412662 chr4:63254712-63254713(+) Y CDS//exon       26075521 chr4:63254718-63254719(+) m6A CDS//exon       25683224//25412662 chr4:63263731-63263732(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:63263756-63263757(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:63272558-63272559(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:63273068-63273069(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63273095-63273096(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63273120-63273121(+) m6A exon//intron       25412662//24981863 chr4:63275062-63275063(+) m6A exon//intron       24981863 chr4:63275932-63275933(+) m6A CDS//exon       25412662//24981863 chr4:63275976-63275977(+) m6A CDS//exon       25412662//24981863 chr4:63277800-63277801(+) m6A CDS//exon       25412662 chr4:63277825-63277826(+) m6A CDS//exon       25412662 chr4:63277834-63277835(+) m6A CDS//exon       25412662//25569111 chr4:63281073-63281074(+) m6A CDS//exon       25412662//25569111 chr4:63281091-63281092(+) m6A CDS//exon       25412662//25569111 chr4:63281272-63281273(+) m6A CDS//exon       25412662 chr4:63282659-63282660(+) m6A CDS//exon       25412662 chr4:63283517-63283518(+) m6A exon//intron       25412662 chr4:63283542-63283543(+) m6A exon//intron       25412662 chr4:63283608-63283609(+) m6A exon//intron       25412662 chr4:63283615-63283616(+) m6A exon//intron       25412662 chr4:63286610-63286611(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63286634-63286635(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63286646-63286647(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63291595-63291596(+) m6A exon//intron       25683224//25412662//24981863 chr4:63291630-63291631(+) m6A exon//intron       25412662//24981863 chr4:63292807-63292808(+) m6A exon//intron       24981863 chr4:63293204-63293205(+) m6A CDS//exon       25412662//24981863 chr4:63293220-63293221(+) m6A CDS//exon       25412662 chr4:63293238-63293239(+) m6A CDS//exon       25412662 chr4:63293481-63293482(+) m6A CDS//exon       25683224//25412662 chr4:63293500-63293501(+) m6A CDS//exon       25683224//25412662 chr4:63293516-63293517(+) m6A CDS//exon       25683224//25412662 chr4:63300691-63300692(+) m6A CDS//exon       25683224//25412662 chr4:63300700-63300701(+) m6A CDS//exon       25683224//25412662 chr4:63301170-63301171(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63301182-63301183(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63301197-63301198(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63301607-63301608(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63302378-63302379(+) m6A CDS//exon       25683224//25412662 chr4:63303035-63303036(+) m6A CDS//exon       25683224//25412662 chr4:63303073-63303074(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63305195-63305196(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63306707-63306708(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63312701-63312702(+) m6A exon//intron       25683224//25412662//24981863 chr4:63312752-63312753(+) m6A exon//intron       25683224//25412662//24981863 chr4:63312776-63312777(+) m6A exon//intron       25683224//25412662 chr4:63313683-63313684(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63313699-63313700(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63313734-63313735(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63314704-63314705(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63315563-63315564(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63315581-63315582(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63317331-63317332(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63317351-63317352(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63317508-63317509(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63318015-63318016(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63318030-63318031(+) m6A CDS//exon       25683224//25412662//24981863 chr4:63318197-63318198(+) m6A CDS//intron       25683224//25412662//24981863 chr4:63318272-63318273(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr4:63318290-63318291(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr4:63318968-63318969(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr4:63319060-63319061(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr4:63319090-63319091(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr4:63319453-63319454(+) m6A 3'UTR//CDS//exon       25683224//25412662 chr4:63319471-63319472(+) m6A 3'UTR//CDS//exon       25683224//25412662 chr4:63321477-63321478(+) m6A 3'UTR//CDS//exon       25683224//25412662 chr4:63321489-63321490(+) m6A 3'UTR//CDS//exon       25683224//25412662 chr4:63321505-63321506(+) m6A 3'UTR//CDS//exon       25683224//25412662 chr4:63323494-63323495(+) m6A 3'UTR//CDS//exon       25683224//25412662 chr4:63323931-63323932(+) m6A 3'UTR//CDS//exon       25683224//25412662 chr4:63324406-63324407(+) m6A CDS//intron       25683224//25412662 chr4:63324468-63324469(+) m6A 3'UTR//CDS//exon       25412662 chr4:63324477-63324478(+) m6A 3'UTR//CDS//exon       25412662 chr4:63324661-63324662(+) m6A 3'UTR//CDS//exon       25412662 chr4:63324773-63324774(+) m6A 3'UTR//CDS//exon       25412662 chr4:63327859-63327860(+) m6A 3'UTR//CDS//exon       25683224//25412662 chr4:63331341-63331342(+) m6A 3'UTR//CDS//exon       25412662//24981863//25569111 chr4:63331369-63331370(+) m6A 3'UTR//CDS//exon       25412662//24981863//25569111 chr4:63331391-63331392(+) m6A 3'UTR//CDS//exon       25412662//24981863//25569111 chr4:63331412-63331413(+) m6A 3'UTR//CDS//exon       25412662//24981863//25569111 chr4:63331442-63331443(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr4:63333185-63333186(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr4:63333203-63333204(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr4:63333210-63333211(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr4:63333240-63333241(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr4:63333289-63333290(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr4:63333360-63333361(+) m6A 3'UTR//exon       25412662//24981863 chr4:63333474-63333475(+) m6A 3'UTR//exon       25683224//25412662//24981863 chr4:63333501-63333502(+) m6A 3'UTR//exon       25683224//25412662//24981863 chr4:63333578-63333579(+) m6A 3'UTR//exon       25683224//25412662//24981863//25569111 chr4:63333605-63333606(+) m6A 3'UTR//exon       25683224//25412662//24981863//25569111 chr4:63333698-63333699(+) m6A 3'UTR//exon       25412662//24981863//25569111 chr4:63333751-63333752(+) m6A 3'UTR//exon       25412662//24981863 chr4:63334303-63334304(+) m6A 3'UTR       25412662 chr4:63334322-63334323(+) m6A 3'UTR       25412662 chr4:63334339-63334340(+) m6A 3'UTR       25412662 chr4:63334389-63334390(+) m6A 3'UTR       25412662 chr4:63334472-63334473(+) m6A 3'UTR       25412662//25569111

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M23-2-3p
Interactor2: Col27a1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar