Basic Information:

  VIRBase ID:  

VHID00606899

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M23-2-3p:  MIMAT0005545          Rinl:  NM_001358916     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M23-2-3p	Rinl
miRBase Accession/Entrez ID	MIMAT0005545	320435
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	5830482F20Rik//9930116N10Rik

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rinl	chr7:28789001-28789002(+) m6A 5'UTR//exon       24981863 chr7:28789020-28789021(+) m6A exon//intron       24981863 chr7:28789025-28789026(+) m6A exon//intron       24981863 chr7:28792253-28792254(+) m6A CDS       25683224 chr7:28792289-28792290(+) m6A CDS       25683224 chr7:28794993-28794994(+) m6A CDS       24981863 chr7:28795687-28795688(+) m6A CDS       25683224//25456834//24981863 chr7:28795717-28795718(+) m6A CDS       25683224//25456834//24981863 chr7:28795734-28795735(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:28795752-28795753(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:28795758-28795759(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:28795770-28795771(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:28795782-28795783(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:28795787-28795788(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr7:28795932-28795933(+) m6A CDS       25683224//25456834//24981863//25569111 chr7:28795942-28795943(+) m6A CDS       25683224//25456834//24981863//25569111 chr7:28795963-28795964(+) m6A CDS       25683224//25456834//24981863//25569111 chr7:28796052-28796053(+) m6A CDS       25683224//24981863//25569111 chr7:28796129-28796130(+) m6A CDS       25683224//24981863//25569111 chr7:28796214-28796215(+) m6A CDS       25683224//24981863 chr7:28796283-28796284(+) m6A CDS       25683224//24981863 chr7:28796310-28796311(+) m6A CDS       25683224//24981863 chr7:28796317-28796318(+) m6A CDS       25683224//24981863 chr7:28796714-28796715(+) m6A CDS       25683224//24981863//25569111 chr7:28796719-28796720(+) m6A CDS       25683224//24981863//25569111 chr7:28796726-28796727(+) m6A CDS       25683224//24981863//25569111 chr7:28796743-28796744(+) m6A CDS       25683224//24981863//25569111 chr7:28796800-28796801(+) m6A CDS       25683224//24981863//25569111 chr7:28796820-28796821(+) m6A CDS       25683224//24981863//25569111 chr7:28796826-28796827(+) m6A CDS       25683224//24981863 chr7:28797846-28797847(+) m6A CDS//exon//intron       25683224//25569111 chr7:28797856-28797857(+) m6A 3'UTR//exon//intron       25683224 chr7:28797870-28797871(+) m6A 3'UTR//exon//intron       25683224 chr7:28797887-28797888(+) m6A 3'UTR//exon//intron       25683224 chr7:28798055-28798056(+) m6A 3'UTR//exon//intron       25683224//24981863 chr7:28798060-28798061(+) m6A 3'UTR//exon//intron       25683224//24981863 chr7:28798072-28798073(+) m6A 3'UTR//exon//intron       25683224//24981863//25569111 chr7:28798224-28798225(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22575960 chr7:28798294-28798295(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111 chr7:28798359-28798360(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111 chr7:28798368-28798369(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111 chr7:28798384-28798385(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111 chr7:28798403-28798404(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111 chr7:28798422-28798423(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111 chr7:28798511-28798512(+) m6A 3'UTR//CDS//exon       25456834//24981863//25569111 chr7:28798546-28798547(+) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111 chr7:28798559-28798560(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111 chr7:28798575-28798576(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111 chr7:28798581-28798582(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111 chr7:28798654-28798655(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr7:28798668-28798669(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr7:28798709-28798710(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr7:28798732-28798733(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr7:28798860-28798861(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111 chr7:28798907-28798908(+) m6A 3'UTR//exon       25683224//25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rinl	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M23-2-3p
Interactor2: Rinl

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar