Detail Information

Basic Information:


  VIRBase ID:  

VHID00604456

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M23-2-3p:           Fndc4:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-M23-2-3p Fndc4
miRBase
Accession/Entrez ID		 MIMAT0005545 64339
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 2810430J06Rik//6330410H20Rik//AB030187//AI838506//AW487863//Fnmp1//FRC//FRCP1

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Fndc4
chr5:31292584-31292585(-) m6A 3'UTR       25683224//24981863
chr5:31292639-31292640(-) m6A 3'UTR       25683224//24981863//25569111
chr5:31292737-31292738(-) m6A 3'UTR       25683224//24981863//25569111
chr5:31292802-31292803(-) m6A 3'UTR       25683224//25456834//24981863//25569111
chr5:31292852-31292853(-) m6A 3'UTR       25683224//25456834//24981863//25569111
chr5:31292882-31292883(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr5:31292892-31292893(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr5:31292916-31292917(-) m6A 3'UTR       25683224//24981863//22608085
chr5:31293033-31293034(-) m6A 3'UTR       25683224//24981863
chr5:31293128-31293129(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr5:31293244-31293245(-) m6A 3'UTR//intron       25683224//24981863
chr5:31293347-31293348(-) m6A 3'UTR//exon//intron       25683224//25412662//24981863
chr5:31293432-31293433(-) m6A 3'UTR//exon       25683224//25412662//24981863
chr5:31293438-31293439(-) m6A 3'UTR//exon       25683224//25412662//24981863
chr5:31293688-31293689(-) m6A CDS//exon       25683224//25412662//24981863
chr5:31293696-31293697(-) m6A CDS//exon       25683224//25412662//22608085
chr5:31293724-31293725(-) m6A CDS//exon       25683224//22608085
chr5:31293770-31293771(-) m6A CDS//exon       25683224//22608085
chr5:31293855-31293856(-) m6A exon//intron       25683224//22608085
chr5:31294148-31294149(-) m6A CDS//exon       25683224//22608085
chr5:31294751-31294752(-) m6A CDS//exon       25683224//25412662//22608085
chr5:31294793-31294794(-) m6A CDS//exon       25683224//25412662//22608085
chr5:31295299-31295300(-) m6A CDS       25683224//22608085
chr5:31295310-31295311(-) m6A CDS       25683224//22608085
chr5:31295540-31295541(-) m6A 5'UTR       25412662
chr5:31295706-31295707(-) m6A 5'UTR//intron       25412662//24981863//25569111
chr5:31295744-31295745(-) m6A 5'UTR//intron       25412662//24981863//25569111
chr5:31295820-31295821(-) m6A 5'UTR//intron       25412662//24981863//25569111
chr5:31295922-31295923(-) m6A 5'UTR//intron       25412662//24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Fndc4
Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-M23-2-3p
Interactor2: Fndc4

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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