Detail Information

Basic Information:


  VIRBase ID:  

VHID00604254

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M23-2-3p:           Srcin1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-M23-2-3p Srcin1
miRBase
Accession/Entrez ID		 MIMAT0005545 56013
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - mKIAA1684//P14//P140//p140Cap//SNIP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Srcin1
chr11:97376760(-) A-I      intronic
chr11:97376117(-) A-I      intronic
chr11:97376783(-) A-I      intronic
chr11:97376742(-) A-I      intronic
chr11:97376126(-) A-I      intronic
chr11:97375090(-) A-I      intronic
chr11:97375098(-) A-I      intronic
chr11:97400118(-) A-I      intronic
chr11:97375124(-) A-I      intronic
chr11:97376777(-) A-I      intronic
chr11:97400105(-) A-I      intronic
chr11:97375436(-) A-I      intronic
chr11:97376775(-) A-I      intronic
chr11:97376167(-) A-I      intronic
chr11:97376795(-) A-I      intronic
chr11:97376796(-) A-I      intronic
chr11:97376746(-) A-I      intronic
chr11:97375192(-) A-I      intronic
chr11:97376753(-) A-I      intronic
chr11:97376141(-) A-I      intronic
chr11:97375095(-) A-I      intronic
chr11:97375062(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Srcin1
chr11:97513748(-) A-I intron -    22524474
chr11:97513776(-) A-I intron -    22524474
chr11:97513781(-) A-I intron -    22524474
chr11:97513784(-) A-I intron -    22524474
chr11:97513810(-) A-I intron -    22524474
chr11:97513878(-) A-I intron -    22524474
chr11:97514122(-) A-I intron -    22524474
chr11:97514803(-) A-I intron -    22524474
chr11:97514812(-) A-I intron -    22524474
chr11:97514827(-) A-I intron -    22524474
chr11:97514853(-) A-I intron -    22524474
chr11:97515428(-) A-I intron -    22524474
chr11:97515432(-) A-I intron -    22524474
chr11:97515439(-) A-I intron -    22524474
chr11:97515446(-) A-I intron -    22524474
chr11:97515461(-) A-I intron -    22524474
chr11:97515463(-) A-I intron -    22524474
chr11:97515469(-) A-I intron -    22524474
chr11:97515481(-) A-I intron -    22524474
chr11:97515482(-) A-I intron -    22524474
chr11:97538791(-) A-I intron -    22524474
chr11:97538804(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Srcin1
chr11:97511098-97511099(-) m6A 3'UTR       26404942
chr11:97511106-97511107(-) m6A 3'UTR       26404942
chr11:97511111-97511112(-) m6A 3'UTR       24981863//26404942
chr11:97511150-97511151(-) m6A 3'UTR       24981863//22608085
chr11:97511318-97511319(-) m6A 3'UTR       24981863//22608085
chr11:97511748-97511749(-) m6A 3'UTR       24981863
chr11:97511831-97511832(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr11:97511915-97511916(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr11:97511947-97511948(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97511952-97511953(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97511997-97511998(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97512006-97512007(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97512013-97512014(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97512034-97512035(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97512040-97512041(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97512048-97512049(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97512100-97512101(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97512120-97512121(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr11:97512129-97512130(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr11:97512277-97512278(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr11:97512282-97512283(-) m6A 3'UTR       25683224//25456834//24981863//22608085
chr11:97512569-97512570(-) m6A CDS       24981863//22608085
chr11:97512608-97512609(-) m6A CDS       24981863//22608085
chr11:97512639-97512640(-) m6A CDS       24981863//22608085
chr11:97519695-97519696(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519702-97519703(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519713-97519714(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519727-97519728(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519783-97519784(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519817-97519818(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519827-97519828(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519842-97519843(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519857-97519858(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519866-97519867(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519882-97519883(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519939-97519940(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519977-97519978(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97519990-97519991(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97520040-97520041(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97520047-97520048(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97520064-97520065(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97520077-97520078(-) m6A intron       25683224//25456834//24981863//25569111//22608085
chr11:97520153-97520154(-) m6A intron       25683224//25456834//25569111
chr11:97521398-97521399(-) m6A intron       24981863
chr11:97525367-97525368(-) m6A CDS       25683224//24981863
chr11:97525414-97525415(-) m6A CDS       25683224//24981863
chr11:97525442-97525443(-) m6A CDS       25683224//24981863
chr11:97534434-97534435(-) m6A CDS       24981863
chr11:97534442-97534443(-) m6A CDS       24981863
chr11:97534492-97534493(-) m6A CDS       25683224//24981863//25569111
chr11:97534504-97534505(-) m6A CDS       25683224//24981863//25569111
chr11:97534669-97534670(-) m6A CDS       24981863
chr11:97534781-97534782(-) m6A CDS       24981863
chr11:97534880-97534881(-) m6A CDS       24981863//25569111
chr11:97534991-97534992(-) m6A CDS       24981863//25569111
chr11:97535170-97535171(-) m6A CDS       24981863//25569111
chr11:97551912-97551913(-) m6A CDS//exon       24981863//22608085
chr11:97566738-97566739(-) m6A CDS//exon//intron       24981863//22608085

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-M23-2-3p
Interactor2: Srcin1

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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