Basic Information:

  VIRBase ID:  

VHID00602800

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M23-2-3p:  MIMAT0005545          Vcan:  NM_019389     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M23-2-3p	Vcan
miRBase Accession/Entrez ID	MIMAT0005545	13003
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	5430420N07Rik//9430051N09//Csp//Cspg2//DPE//DPEAAE//hdf//NG2//PG-//PG-M//PG-M(V0)//PG-M(V1)

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Vcan	chr13:89655564-89655565(-) m6A 3'UTR       24981863 chr13:89655655-89655656(-) m6A 3'UTR       25683224//24981863//25456834 chr13:89655718-89655719(-) m6A 3'UTR       25683224//24981863//25456834 chr13:89655787-89655788(-) m6A 3'UTR       25683224//24981863 chr13:89655793-89655794(-) m6A 3'UTR       25683224//24981863 chr13:89655799-89655800(-) m6A 3'UTR       25683224//24981863 chr13:89655872-89655873(-) m6A 3'UTR       25683224//26404942 chr13:89656354-89656355(-) m6A 3'UTR       25569111 chr13:89656510-89656511(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr13:89656528-89656529(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr13:89656609-89656610(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89656686-89656687(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89656697-89656698(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89656849-89656850(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr13:89656963-89656964(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89657068-89657069(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89657120-89657121(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89657214-89657215(-) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//26404942//22608085 chr13:89657241-89657242(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25412662//25569111//26404942//22608085 chr13:89657275-89657276(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr13:89657297-89657298(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085 chr13:89657340-89657341(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085 chr13:89657451-89657452(-) m6A 3'UTR//intron       25683224//24981863//25569111 chr13:89657476-89657477(-) m6A CDS//intron       24981863//25569111 chr13:89657504-89657505(-) m6A CDS       24981863//25569111 chr13:89685132-89685133(-) m6A CDS       25683224//24981863//25569111 chr13:89685174-89685175(-) m6A CDS       25683224//24981863//25569111 chr13:89688344-89688345(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89688358-89688359(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89688459-89688460(-) m6A CDS//intron       24981863//25569111 chr13:89688506-89688507(-) m6A CDS//intron       24981863//25569111 chr13:89688581-89688582(-) m6A CDS//intron       24981863//25569111 chr13:89688663-89688664(-) m6A CDS//intron       25412662//24981863//25569111//22608085 chr13:89688677-89688678(-) m6A CDS//intron       25412662//24981863//25456834//25569111 chr13:89688704-89688705(-) m6A CDS//intron       25412662//24981863//25456834//25569111 chr13:89688733-89688734(-) m6A CDS//intron       25412662//24981863//25456834//25569111 chr13:89688742-89688743(-) m6A CDS//intron       25412662//24981863//25456834//25569111 chr13:89688752-89688753(-) m6A CDS//intron       25412662//24981863//25456834//25569111 chr13:89688759-89688760(-) m6A CDS//intron       25412662//24981863//25456834//25569111 chr13:89688780-89688781(-) m6A CDS//intron       25412662//24981863//25456834//25569111 chr13:89688857-89688858(-) m6A CDS//intron       24981863//25569111 chr13:89688890-89688891(-) m6A CDS//intron       24981863//25569111 chr13:89689012-89689013(-) m6A CDS//intron       24981863//25569111 chr13:89689113-89689114(-) m6A CDS//intron       24981863//25456834//25569111//22608085 chr13:89689142-89689143(-) m6A CDS//intron       24981863//25456834//25569111//22608085 chr13:89689274-89689275(-) m6A CDS//intron       24981863//25569111 chr13:89689315-89689316(-) m6A CDS//intron       24981863//25569111 chr13:89689389-89689390(-) m6A CDS//intron       24981863//25456834//25569111 chr13:89689419-89689420(-) m6A CDS//intron       25456834//24981863//25569111//22608085 chr13:89689472-89689473(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89689519-89689520(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89689721-89689722(-) m6A CDS//intron       25456834//24981863//25569111//26404942//22608085 chr13:89689752-89689753(-) m6A CDS//intron       25456834//24981863//25569111//26404942//22608085 chr13:89689768-89689769(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr13:89689846-89689847(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr13:89689864-89689865(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr13:89689892-89689893(-) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942//22608085 chr13:89689908-89689909(-) m6A CDS//intron       25456834//24981863//25569111//26404942//22608085 chr13:89689939-89689940(-) m6A CDS//intron       24981863//25569111//22608085 chr13:89690090-89690091(-) m6A CDS//intron       25683224//24981863//25569111//22608085 chr13:89690109-89690110(-) m6A CDS//intron       25683224//24981863//25569111//22608085 chr13:89690143-89690144(-) m6A CDS//intron       25683224//24981863//25569111//22608085 chr13:89690168-89690169(-) m6A CDS//intron       25683224//24981863//25569111//22608085 chr13:89690224-89690225(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89690271-89690272(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89690294-89690295(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89690370-89690371(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89690381-89690382(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89690388-89690389(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89690396-89690397(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89690402-89690403(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89690423-89690424(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89690446-89690447(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89690484-89690485(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89690492-89690493(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89690533-89690534(-) m6A CDS//intron       25456834//25412662//24981863//25569111 chr13:89690552-89690553(-) m6A CDS//intron       25456834//25412662//24981863//25569111 chr13:89690605-89690606(-) m6A CDS//intron       25412662//24981863//25569111 chr13:89690633-89690634(-) m6A CDS//intron       25412662//24981863//25569111 chr13:89690657-89690658(-) m6A CDS//intron       25412662//24981863//25569111 chr13:89690748-89690749(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89690790-89690791(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89690811-89690812(-) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr13:89690947-89690948(-) m6A CDS//intron       25456834//24981863//25569111 chr13:89691059-89691060(-) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942 chr13:89691071-89691072(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691089-89691090(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691105-89691106(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691140-89691141(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691147-89691148(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691173-89691174(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691192-89691193(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691213-89691214(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691242-89691243(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691253-89691254(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89691342-89691343(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89691407-89691408(-) m6A CDS//intron       25683224//25569111 chr13:89691421-89691422(-) m6A CDS//intron       25683224//25569111 chr13:89691549-89691550(-) m6A CDS//intron       25412662//24981863//25456834//25569111 chr13:89691580-89691581(-) m6A CDS//intron       25412662//24981863//25456834//25569111 chr13:89691608-89691609(-) m6A CDS//intron       25412662//24981863//25569111 chr13:89691656-89691657(-) m6A CDS//intron       25412662//24981863//25569111 chr13:89691797-89691798(-) m6A CDS//intron       24981863//25569111 chr13:89691809-89691810(-) m6A CDS//intron       24981863//25569111 chr13:89691838-89691839(-) m6A CDS//intron       24981863//25569111 chr13:89691935-89691936(-) m6A CDS//intron       24981863//25569111 chr13:89691978-89691979(-) m6A CDS//intron       24981863//25569111 chr13:89692012-89692013(-) m6A CDS//intron       24981863//25569111 chr13:89692127-89692128(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89692184-89692185(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89692391-89692392(-) m6A CDS//intron       25412662//24981863 chr13:89692434-89692435(-) m6A CDS//intron       25412662//24981863//25569111 chr13:89692480-89692481(-) m6A CDS//intron       24981863//25569111 chr13:89692640-89692641(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89692694-89692695(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89692722-89692723(-) m6A CDS//intron       25412662//24981863//25569111 chr13:89692796-89692797(-) m6A CDS//intron       24981863//25412662//25569111//22608085 chr13:89692838-89692839(-) m6A CDS//intron       24981863//25569111//22608085 chr13:89692854-89692855(-) m6A CDS//intron       24981863//25569111//22608085 chr13:89692911-89692912(-) m6A CDS//intron       24981863//25569111 chr13:89692933-89692934(-) m6A CDS//intron       24981863//25569111 chr13:89692973-89692974(-) m6A CDS//intron       24981863//25569111 chr13:89693032-89693033(-) m6A CDS//intron       24981863//25569111 chr13:89693039-89693040(-) m6A CDS//intron       24981863//25569111 chr13:89693051-89693052(-) m6A CDS//intron       24981863//25569111 chr13:89693058-89693059(-) m6A CDS//intron       24981863//25569111 chr13:89693129-89693130(-) m6A CDS//intron       25456834//24981863//25569111 chr13:89693236-89693237(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89693320-89693321(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89693359-89693360(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89693374-89693375(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89693423-89693424(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89693439-89693440(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89702920-89702921(-) m6A CDS//intron       25412662//24981863//25569111 chr13:89702925-89702926(-) m6A CDS//intron       25412662//24981863//25569111 chr13:89702974-89702975(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89703010-89703011(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89703022-89703023(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89703044-89703045(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89703068-89703069(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89703100-89703101(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr13:89703178-89703179(-) m6A CDS//intron       25683224//24981863//25412662//25569111 chr13:89703212-89703213(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89703332-89703333(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89703394-89703395(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89703421-89703422(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89703564-89703565(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89703607-89703608(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89703697-89703698(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89703751-89703752(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89703758-89703759(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89703769-89703770(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89703793-89703794(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89703836-89703837(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89703892-89703893(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89703913-89703914(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89703951-89703952(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89704110-89704111(-) m6A CDS//intron       25683224//25569111 chr13:89704140-89704141(-) m6A CDS//intron       25683224//25569111 chr13:89704259-89704260(-) m6A CDS//intron       25683224//25569111 chr13:89704388-89704389(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89704525-89704526(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89704624-89704625(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89704687-89704688(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr13:89704763-89704764(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89704771-89704772(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89704777-89704778(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89704804-89704805(-) m6A CDS//intron       25683224//24981863//25569111//22608085 chr13:89704957-89704958(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89704964-89704965(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89705037-89705038(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89705061-89705062(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89705071-89705072(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr13:89705143-89705144(-) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr13:89705148-89705149(-) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr13:89705240-89705241(-) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr13:89705272-89705273(-) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr13:89705277-89705278(-) m6A CDS//intron       25683224//24981863//25569111//22608085 chr13:89705354-89705355(-) m6A CDS//intron       25683224//24981863//25569111//22608085 chr13:89705380-89705381(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89705450-89705451(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89705475-89705476(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89705612-89705613(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89705717-89705718(-) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr13:89705743-89705744(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89705792-89705793(-) m6A CDS//intron       25683224//24981863//25569111 chr13:89710716-89710717(-) m6A exon//intron       25683224//24981863//25569111 chr13:89712252-89712253(-) m6A CDS//exon       25683224//24981863//25569111 chr13:89712257-89712258(-) m6A CDS//exon       25683224//24981863//25569111 chr13:89712276-89712277(-) m6A CDS//exon       25683224//24981863//25569111 chr13:89712400-89712401(-) m6A CDS//exon       25683224//25569111 chr13:89721602-89721603(-) m6A CDS//exon       25683224//22608085 chr13:89721629-89721630(-) m6A CDS//exon       25683224//25412662 chr13:89721655-89721656(-) m6A CDS//exon       25683224//25412662 chr13:89721778-89721779(-) m6A CDS//exon       25683224//25412662 chr13:89725376-89725377(-) m6A CDS       25683224//24981863//25569111 chr13:89725446-89725447(-) m6A CDS       25683224//24981863//25456834//25412662//25569111 chr13:89725518-89725519(-) m6A CDS       25683224//24981863//25456834//25412662//25569111 chr13:89725651-89725652(-) m6A CDS       25683224//25569111 chr13:89740182-89740183(-) m6A 5'UTR//intron       25569111 chr13:89740213-89740214(-) m6A 5'UTR//intron       25569111 chr13:89740284-89740285(-) m6A 5'UTR//intron       25569111 chr13:89740316-89740317(-) m6A 5'UTR//intron       25569111 chr13:89742094-89742095(-) m6A 5'UTR       25683224//25412662//25569111 chr13:89742248-89742249(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:89742306-89742307(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:89742345-89742346(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr13:89742444-89742445(-) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Vcan	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M23-2-3p
Interactor2: Vcan

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar