Basic Information:

  VIRBase ID:  

VHID00602151

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-M23-1-3p:  MIMAT0005543          Secisbp2:  NM_029279     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-M23-1-3p	Secisbp2
miRBase Accession/Entrez ID	MIMAT0005543	75420
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2210413N07Rik//2810012K13Rik//SB//SBP2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Secisbp2	chr13:51652635-51652636(+) m6A CDS//exon       25569111 chr13:51654572-51654573(+) m6A CDS//exon//intron       25412662 chr13:51655103-51655104(+) m6A CDS//exon//intron       25412662//24981863 chr13:51655184-51655185(+) m6A CDS//exon//intron       25412662//24981863 chr13:51655218-51655219(+) m6A CDS//exon//intron       25412662//24981863//22608085 chr13:51656944-51656945(+) m6A CDS//exon       25683224//22608085 chr13:51656970-51656971(+) m6A CDS//exon       25683224//22608085 chr13:51656980-51656981(+) m6A CDS//exon       25683224//22608085 chr13:51670829-51670830(+) m6A CDS       24981863 chr13:51670835-51670836(+) m6A CDS       24981863 chr13:51670883-51670884(+) m6A CDS       24981863 chr13:51673113-51673114(+) m6A CDS       24981863 chr13:51673146-51673147(+) m6A CDS       25412662//24981863 chr13:51673899-51673900(+) m6A CDS       25412662//24981863 chr13:51673936-51673937(+) m6A CDS       25412662//24981863//25569111 chr13:51674012-51674013(+) m6A CDS       25412662//24981863//25569111 chr13:51676357-51676358(+) m6A CDS       25683224//25412662//24981863 chr13:51676376-51676377(+) m6A CDS       25683224//25412662//24981863 chr13:51677254-51677255(+) m6A CDS       25683224//25412662 chr13:51677267-51677268(+) m6A CDS       25683224//25412662 chr13:51678844-51678845(+) m6A CDS       25683224//25412662 chr13:51678920-51678921(+) m6A CDS       25683224//25412662 chr13:51679809-51679810(+) m6A CDS//exon       25683224//25412662 chr13:51679844-51679845(+) m6A CDS//exon       25683224//25412662 chr13:51679885-51679886(+) m6A CDS//exon       25683224//25412662 chr13:51679940-51679941(+) m6A CDS//exon       25683224//25412662 chr13:51681777-51681778(+) m6A exon//intron       25683224//25412662 chr13:51681798-51681799(+) m6A exon//intron       25412662 chr13:51682444-51682445(+) m6A CDS//exon       25412662 chr13:51682497-51682498(+) m6A CDS//exon       25683224//25412662 chr13:51682509-51682510(+) m6A CDS//exon       25683224//25412662//24981863 chr13:51682523-51682524(+) m6A CDS//exon       25683224//25412662//24981863 chr13:51682535-51682536(+) m6A CDS//exon       25683224//25412662//24981863 chr13:51682541-51682542(+) m6A CDS//exon       25683224//25412662//24981863 chr13:51682573-51682574(+) m6A CDS//exon       25683224//24981863//25569111 chr13:51683334-51683335(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr13:51683367-51683368(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr13:51683438-51683439(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr13:51683678-51683679(+) m6A 3'UTR       25683224//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Secisbp2	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-M23-1-3p
Interactor2: Secisbp2

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar