Detail Information

Basic Information:


  VIRBase ID:  

VHID00600852

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m22-1:           Setdb1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m22-1 Setdb1
miRBase
Accession/Entrez ID		 MIMAT0005541 84505
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - AU022152//ESE//ESET//KMT1E//mKIAA0067

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Setdb1
chr3:95323887-95323888(-) m6A 3'UTR//exon       25456834//24981863//25569111
chr3:95323927-95323928(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr3:95323999-95324000(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr3:95324021-95324022(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr3:95324040-95324041(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr3:95324065-95324066(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr3:95324081-95324082(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr3:95324157-95324158(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr3:95324168-95324169(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr3:95324173-95324174(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr3:95326244-95326245(-) m6A CDS//exon       25412662//24981863//25569111
chr3:95326397-95326398(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr3:95326403-95326404(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr3:95327229-95327230(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111
chr3:95327320-95327321(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95327400-95327401(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95327410-95327411(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95327484-95327485(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr3:95327499-95327500(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr3:95327545-95327546(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr3:95327592-95327593(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr3:95327646-95327647(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95327676-95327677(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr3:95327742-95327743(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr3:95327763-95327764(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr3:95327808-95327809(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr3:95328612-95328613(-) m6A CDS//exon       25569111//22608085
chr3:95328619-95328620(-) m6A CDS//exon       25569111//22608085
chr3:95328678-95328679(-) m6A CDS//exon       25569111//22608085
chr3:95337171-95337172(-) m6A CDS//exon       22608085
chr3:95338516-95338517(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr3:95338616-95338617(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr3:95338673-95338674(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95338765-95338766(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95338782-95338783(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr3:95338797-95338798(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr3:95339195-95339196(-) m6A exon//intron       24981863
chr3:95340031-95340032(-) m6A CDS//exon       24981863//22608085
chr3:95341396-95341397(-) m6A CDS//exon       -
chr3:95341415-95341416(-) m6A CDS//exon       -
chr3:95341729-95341730(-) m6A CDS//exon       22608085
chr3:95341770-95341771(-) m6A CDS//exon       22608085
chr3:95341803-95341804(-) m6A CDS//exon       22608085
chr3:95341827-95341828(-) m6A CDS//exon       22608085
chr3:95347001-95347002(-) m6A CDS//exon       24981863//22608085
chr3:95347034-95347035(-) m6A CDS//exon       24981863//22608085
chr3:95347040-95347041(-) m6A CDS//exon       24981863//22608085
chr3:95347078-95347079(-) m6A CDS//exon       24981863//22608085
chr3:95354641-95354642(-) m6A CDS//exon       -
chr3:95355630-95355631(-) m6A exon//intron       25412662
chr3:95355695-95355696(-) m6A exon//intron       25412662
chr3:95355700-95355701(-) m6A exon//intron       25412662
chr3:95356038-95356039(-) m6A CDS//exon       25683224//25412662//24981863//25456834
chr3:95356052-95356053(-) m6A CDS//exon       25683224//25412662//24981863//25456834
chr3:95356076-95356077(-) m6A CDS//exon       25683224//25412662//24981863//25456834
chr3:95357069-95357070(-) m6A 5'UTR//exon       25412662
chr3:95357133-95357134(-) m6A 5'UTR//exon       25412662

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Setdb1
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m22-1
Interactor2: Setdb1

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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