Detail Information

Basic Information:


  VIRBase ID:  

VHID00598736

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m21-1:           Trub2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m21-1 Trub2
miRBase
Accession/Entrez ID		 MIMAT0005540 227682
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - G430055L02Rik

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Trub2
chr2:29632306(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Trub2
chr2:29776786(-) A-I exon 3'UTR    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Trub2
chr2:29776772-29776773(-) m6A 3'UTR//intron       25456834//24981863//25569111
chr2:29776791-29776792(-) m6A 3'UTR//intron       25456834//24981863//25569111
chr2:29776964-29776965(-) m6A 3'UTR//intron       25456834//24981863//25569111
chr2:29777036-29777037(-) m6A 3'UTR//intron       25456834//24981863//25569111
chr2:29777064-29777065(-) m6A 3'UTR//intron       25456834//24981863//25569111
chr2:29777127-29777128(-) m6A 3'UTR//intron       24981863//25569111
chr2:29777404-29777405(-) m6A 3'UTR//intron       25456834//24981863//25569111
chr2:29777516-29777517(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr2:29777522-29777523(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr2:29777578-29777579(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr2:29777599-29777600(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr2:29777673-29777674(-) m6A 3'UTR//CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr2:29777736-29777737(-) m6A 3'UTR//CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr2:29777747-29777748(-) m6A 3'UTR//CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr2:29777802-29777803(-) m6A 3'UTR//CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr2:29777812-29777813(-) m6A 3'UTR//CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr2:29777854-29777855(-) m6A 3'UTR//CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr2:29777884-29777885(-) m6A 3'UTR//CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr2:29778599-29778600(-) m6A 3'UTR//intron       25683224//25412662//24981863//25569111
chr2:29778796-29778797(-) m6A 3'UTR//CDS//exon//intron       25683224
chr2:29778853-29778854(-) m6A 3'UTR//CDS//exon//intron       25683224
chr2:29779213-29779214(-) m6A exon//intron       25683224
chr2:29779231-29779232(-) m6A exon//intron       25683224
chr2:29779258-29779259(-) m6A exon//intron       25683224
chr2:29779271-29779272(-) m6A exon//intron       25683224
chr2:29779302-29779303(-) m6A exon//intron       25683224//24981863
chr2:29779446-29779447(-) m6A exon//intron       25683224//24981863
chr2:29779485-29779486(-) m6A exon//intron       25683224
chr2:29779557-29779558(-) m6A exon//intron       25683224
chr2:29779563-29779564(-) m6A exon//intron       25683224
chr2:29779870-29779871(-) m6A 3'UTR//CDS//exon       25683224//22608085
chr2:29787526-29787527(-) m6A CDS//exon       24981863//25569111
chr2:29787560-29787561(-) m6A CDS//exon       24981863//25569111
chr2:29787627-29787628(-) m6A 5'UTR//exon       25683224//24981863//25569111
chr2:29787673-29787674(-) m6A 5'UTR       24981863//25569111
chr2:29787690-29787691(-) m6A 5'UTR       24981863//25569111
chr2:29787714-29787715(-) m6A 5'UTR       24981863
chr2:29788208-29788209(-) m6A 5'UTR       25456834//25569111
chr2:29788217-29788218(-) m6A 5'UTR       25456834//25569111
chr2:29788328-29788329(-) m6A 5'UTR       24981863//25569111
chr2:29788379-29788380(-) m6A 5'UTR       24981863//25569111

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m21-1
Interactor2: Trub2

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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