Basic Information:

  VIRBase ID:  

VHID00598588

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m21-1:  MIMAT0005540          Nr1d1:  NM_145434     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m21-1	Nr1d1
miRBase Accession/Entrez ID	MIMAT0005540	217166
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	A530070C09Rik//R75201

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Nr1d1	chr11:98768009-98768010(-) m6A 3'UTR       24981863 chr11:98768173-98768174(-) m6A 3'UTR       25412662//24981863//22608085 chr11:98768268-98768269(-) m6A CDS       25412662//24981863//26404942//22608085 chr11:98768275-98768276(-) m6A CDS       25412662//24981863//26404942//22608085 chr11:98768283-98768284(-) m6A CDS       25412662//24981863//26404942//22608085 chr11:98768320-98768321(-) m6A CDS       25412662//22608085 chr11:98768334-98768335(-) m6A CDS       25412662//24981863//22608085 chr11:98769213-98769214(-) m6A CDS       25412662//22608085 chr11:98770720-98770721(-) m6A CDS       25412662//24981863//25569111 chr11:98770761-98770762(-) m6A CDS       25412662//24981863 chr11:98771282-98771283(-) m6A CDS       25412662//22608085 chr11:98771977-98771978(-) m6A CDS       25412662//24981863 chr11:98772086-98772087(-) m6A CDS       25412662 chr11:98774734-98774735(-) m6A CDS       25412662 chr11:98774749-98774750(-) m6A 5'UTR       25412662 chr11:98774861-98774862(-) m6A 5'UTR       25412662//24981863//25569111 chr11:98774896-98774897(-) m6A 5'UTR       25412662//24981863//25569111//22608085 chr11:98775009-98775010(-) m6A 5'UTR       25456834//25412662//24981863//25569111//22608085 chr11:98775040-98775041(-) m6A 5'UTR       25456834//25412662//24981863//25569111//22608085 chr11:98775120-98775121(-) m6A 5'UTR       25456834//25412662//24981863//25569111//22608085 chr11:98775311-98775312(-) m6A 5'UTR       25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Nr1d1	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m21-1
Interactor2: Nr1d1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar