Basic Information:

  VIRBase ID:  

VHID00598253

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m21-1:  MIMAT0005540          Slc12a6:  NM_133648     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m21-1	Slc12a6
miRBase Accession/Entrez ID	MIMAT0005540	107723
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	9530023I19Rik//ga//gaxp//KCC3

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Slc12a6	chr2:112355501(+) A-I intron -    22524474 chr2:112355507(+) A-I intron -    22524474 chr2:112355885(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Slc12a6	chr2:112265826-112265827(+) m6A 5'UTR       25412662//24981863//25569111 chr2:112265896-112265897(+) m6A 5'UTR       25412662//24981863//25569111 chr2:112265931-112265932(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112266000-112266001(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112266028-112266029(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112266111-112266112(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112266225-112266226(+) m6A 5'UTR       25683224//25456834//24981863//25569111//22608085 chr2:112266251-112266252(+) m6A 5'UTR       25683224//25456834//24981863//25569111//22608085 chr2:112266288-112266289(+) m6A 5'UTR       25683224//25456834//24981863//25569111//22608085 chr2:112266405-112266406(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:112266413-112266414(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:112266431-112266432(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:112266449-112266450(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:112266520-112266521(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:112266550-112266551(+) m6A 5'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112266637-112266638(+) m6A 5'UTR       25683224//25456834//24981863//25569111 chr2:112266909-112266910(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112266921-112266922(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112266980-112266981(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112267006-112267007(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112267064-112267065(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:112284684-112284685(+) m6A 5'UTR//intron       24981863//25569111 chr2:112284718-112284719(+) m6A CDS//intron       24981863 chr2:112284800-112284801(+) m6A CDS//intron       24981863 chr2:112316252-112316253(+) m6A CDS//intron       24981863 chr2:112334378-112334379(+) m6A CDS       24981863 chr2:112334385-112334386(+) m6A CDS       24981863 chr2:112334451-112334452(+) m6A CDS       24981863 chr2:112334468-112334469(+) m6A CDS       24981863 chr2:112352987-112352988(+) m6A CDS//exon       25683224//24981863//25412662//22608085 chr2:112353019-112353020(+) m6A CDS//exon       25683224//24981863//25412662//22608085 chr2:112353031-112353032(+) m6A CDS//exon       25683224//24981863//25412662//22608085 chr2:112357573-112357574(+) m6A CDS//exon       25412662//22608085 chr2:112357583-112357584(+) m6A CDS//exon       25683224//25412662//22608085 chr2:112357789-112357790(+) m6A CDS//exon       25683224//25412662//22608085 chr2:112357836-112357837(+) m6A CDS//exon       25683224//25412662//22608085 chr2:112357872-112357873(+) m6A CDS//exon       25683224//24981863//22608085 chr2:112357933-112357934(+) m6A CDS//exon       24981863//22608085 chr2:112358507-112358508(+) m6A CDS//exon       24981863//22608085 chr2:112358607-112358608(+) m6A CDS//exon       24981863//25569111 chr2:112358618-112358619(+) m6A CDS//exon       24981863//25569111 chr2:112358636-112358637(+) m6A CDS//exon//intron       24981863//25569111 chr2:112358971-112358972(+) m6A 3'UTR//intron       25456834//24981863//25569111 chr2:112358984-112358985(+) m6A 3'UTR//intron       25456834//24981863//25569111 chr2:112358996-112358997(+) m6A 3'UTR//intron       25456834//24981863//25569111 chr2:112359120-112359121(+) m6A 3'UTR//intron       24981863 chr2:112360546-112360547(+) m6A 3'UTR//exon       24981863 chr2:112360657-112360658(+) m6A 3'UTR//exon       24981863 chr2:112361938-112361939(+) m6A 3'UTR//exon       24981863//22608085 chr2:112361945-112361946(+) m6A 3'UTR//exon       24981863//22608085 chr2:112361966-112361967(+) m6A 3'UTR//exon       24981863//22608085 chr2:112361976-112361977(+) m6A 3'UTR//exon       24981863//22608085 chr2:112362196-112362197(+) m6A 3'UTR//exon       24981863//22608085 chr2:112362990-112362991(+) m6A 3'UTR//exon       24981863//22608085 chr2:112363001-112363002(+) m6A 3'UTR//exon       24981863//22608085 chr2:112363010-112363011(+) m6A 3'UTR//exon       24981863//22608085

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m21-1
Interactor2: Slc12a6

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar