Basic Information:

  VIRBase ID:  

VHID00597747

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m21-1:  MIMAT0005540          Ccdc71:  NM_133744     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m21-1	Ccdc71
miRBase Accession/Entrez ID	MIMAT0005540	72454
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2600016J21Rik

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ccdc71	chr9:108461560-108461561(+) m6A 5'UTR//intron       24981863//25569111 chr9:108461578-108461579(+) m6A 5'UTR//intron       24981863//25569111 chr9:108463238-108463239(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr9:108463289-108463290(+) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr9:108463316-108463317(+) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr9:108463535-108463536(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108463623-108463624(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:108463669-108463670(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:108463718-108463719(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108463769-108463770(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108463793-108463794(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108463835-108463836(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108463841-108463842(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108463847-108463848(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr9:108463926-108463927(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr9:108463938-108463939(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr9:108463973-108463974(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108464009-108464010(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108464015-108464016(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108464028-108464029(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108464037-108464038(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108464048-108464049(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108464081-108464082(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108464161-108464162(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108464177-108464178(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:108464190-108464191(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:108464335-108464336(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr9:108464380-108464381(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr9:108464406-108464407(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr9:108464414-108464415(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:108465240-108465241(+) m6A 3'UTR       24981863 chr9:108465322-108465323(+) m6A 3'UTR       24981863 chr9:108465385-108465386(+) m6A 3'UTR       24981863 chr9:108465419-108465420(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Ccdc71	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m21-1
Interactor2: Ccdc71

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar