Basic Information:

  VIRBase ID:  

VHID00597291

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m21-1:  MIMAT0005540          Knop1:  NM_001168219     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m21-1	Knop1
miRBase Accession/Entrez ID	MIMAT0005540	66356
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2310008H09Rik//Tsg11//Tsg118

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Knop1	chr7:118842504-118842505(-) Y 3'UTR//exon       26075521 chr7:118843162-118843163(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr7:118843194-118843195(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:118843199-118843200(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:118843291-118843292(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118843313-118843314(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118843357-118843358(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118843365-118843366(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118843395-118843396(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118843426-118843427(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118843432-118843433(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118843523-118843524(-) m6A 3'UTR       25456834//25412662//24981863//25569111 chr7:118843883-118843884(-) m6A 3'UTR       - chr7:118843909-118843910(-) m6A 3'UTR       - chr7:118844080-118844081(-) m6A 3'UTR       25456834//24981863//25569111 chr7:118844211-118844212(-) m6A 3'UTR       25456834//24981863//25569111 chr7:118844341-118844342(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr7:118844415-118844416(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118844424-118844425(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118844448-118844449(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118844500-118844501(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118844540-118844541(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118844568-118844569(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr7:118844751-118844752(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr7:118844773-118844774(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118844794-118844795(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118844825-118844826(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118844891-118844892(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:118844935-118844936(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr7:118845038-118845039(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr7:118845140-118845141(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118845161-118845162(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118845168-118845169(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118845175-118845176(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118845222-118845223(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118845245-118845246(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:118845654-118845655(-) m6A 3'UTR       24981863//25569111 chr7:118845694-118845695(-) m6A 3'UTR       24981863//25569111 chr7:118845759-118845760(-) m6A 3'UTR       24981863//25569111 chr7:118845903-118845904(-) m6A CDS       25683224//24981863//25569111//22608085 chr7:118845945-118845946(-) m6A CDS       25683224//24981863//25569111//22608085 chr7:118846046-118846047(-) m6A CDS       25683224//24981863//25569111//22608085 chr7:118846090-118846091(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:118848463-118848464(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr7:118848477-118848478(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr7:118848498-118848499(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr7:118848511-118848512(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr7:118848525-118848526(-) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr7:118850624-118850625(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:118850634-118850635(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:118850675-118850676(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:118850681-118850682(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:118852424-118852425(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr7:118852458-118852459(-) m1A CDS//intron       26863196 chr7:118852467-118852468(-) m1A CDS//intron       26863196 chr7:118852504-118852505(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr7:118852556-118852557(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr7:118852619-118852620(-) m6A CDS//intron       25683224//25412662//24981863//25456834//25569111 chr7:118852655-118852656(-) m6A CDS//intron       25683224//25412662//24981863//25456834//25569111 chr7:118852671-118852672(-) m6A CDS//intron       25683224//25412662//24981863//25456834//25569111 chr7:118852744-118852745(-) m6A CDS//intron       25683224//25412662//24981863//25456834//25569111//22608085 chr7:118852858-118852859(-) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr7:118852907-118852908(-) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr7:118852917-118852918(-) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr7:118853213-118853214(-) m6A CDS//intron       25683224//24981863//25456834//25569111 chr7:118853232-118853233(-) m6A CDS//intron       25683224//24981863//25456834//25412662//25569111 chr7:118853239-118853240(-) m6A CDS//intron       25683224//24981863//25456834//25412662//25569111 chr7:118853312-118853313(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr7:118853325-118853326(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr7:118855560-118855561(-) m6A 5'UTR//intron       24981863 chr7:118855626-118855627(-) m6A 5'UTR//CDS       25412662//24981863 chr7:118855885-118855886(-) m6A 5'UTR       25412662

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Knop1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m21-1
Interactor2: Knop1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar