Detail Information

Basic Information:


  VIRBase ID:  

VHID00597221

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m21-1:           Wtap:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m21-1 Wtap
miRBase
Accession/Entrez ID		 MIMAT0005540 60532
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 2810408K05Rik//9430038B09Rik

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Wtap
chr17:13164892(-) A-I      3'UTR
chr17:13171990(-) A-I      intronic
chr17:13165158(-) A-I      3'UTR
chr17:13171992(-) A-I      intronic
chr17:13164894(-) A-I      3'UTR
chr17:13165159(-) A-I      3'UTR
chr17:13165107(-) A-I      3'UTR
chr17:13164877(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Wtap
chr17:12972011(-) A-I exon 3'UTR    22524474
chr17:12972026(-) A-I exon 3'UTR    22524474
chr17:12972028(-) A-I exon 3'UTR    22524474
chr17:12972241(-) A-I exon 3'UTR    22524474
chr17:12972292(-) A-I exon 3'UTR    22524474
chr17:12972293(-) A-I exon 3'UTR    22524474
chr17:12979124(-) A-I intron -    22524474
chr17:12979126(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Wtap
chr17:12967238-12967239(-) m6A 3'UTR       24981863
chr17:12967501-12967502(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr17:12967535-12967536(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr17:12967588-12967589(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr17:12967618-12967619(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr17:12967639-12967640(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:12967669-12967670(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:12967697-12967698(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960
chr17:12967830-12967831(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:12967852-12967853(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr17:12967884-12967885(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr17:12967898-12967899(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr17:12967964-12967965(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr17:12969508-12969509(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr17:12969554-12969555(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr17:12972695-12972696(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111
chr17:12972703-12972704(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111
chr17:12972743-12972744(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111
chr17:12974042-12974043(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr17:12974054-12974055(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr17:12974087-12974088(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr17:12974095-12974096(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr17:12974117-12974118(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr17:12974548-12974549(-) m6A 3'UTR//intron       25456834
chr17:12974680-12974681(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr17:12974699-12974700(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr17:12974716-12974717(-) m6A 3'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr17:12974746-12974747(-) m6A 3'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085//22575960
chr17:12974760-12974761(-) m6A 3'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085//22575960
chr17:12974776-12974777(-) m6A 3'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085//22575960
chr17:12974783-12974784(-) m6A 3'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085//22575960
chr17:12974810-12974811(-) m6A 3'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr17:12974882-12974883(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr17:12974928-12974929(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr17:12974965-12974966(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr17:12975008-12975009(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr17:12975016-12975017(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr17:12975061-12975062(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr17:12975121-12975122(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr17:12975134-12975135(-) m6A 3'UTR//intron       25456834//24981863
chr17:12975194-12975195(-) m6A 3'UTR//intron       25456834//24981863
chr17:12975200-12975201(-) m6A 3'UTR//intron       25456834//24981863
chr17:12975228-12975229(-) m6A 3'UTR//intron       25456834//24981863
chr17:12975267-12975268(-) m6A 3'UTR//intron       25456834//24981863
chr17:12975290-12975291(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr17:12975324-12975325(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:12975339-12975340(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:12975349-12975350(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:12975360-12975361(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:12975366-12975367(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:12975406-12975407(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr17:12980873-12980874(-) m6A CDS       25683224//24981863//25569111
chr17:12980911-12980912(-) m6A CDS       25683224//24981863//25569111
chr17:12981801-12981802(-) m6A CDS//exon       25569111//22608085
chr17:12983496-12983497(-) m6A CDS//exon       25569111
chr17:12983562-12983563(-) m6A exon//intron       25569111
chr17:12985930-12985931(-) m6A CDS       25412662//25569111
chr17:12986013-12986014(-) m6A 5'UTR//intron       25412662//25569111
chr17:12986037-12986038(-) m6A 5'UTR//intron       25412662//25569111
chr17:12986084-12986085(-) m6A 5'UTR//intron       25412662
chr17:12992190-12992191(-) m6A 5'UTR//intron       24981863//25456834//25569111
chr17:12992452-12992453(-) m6A 5'UTR       25412662

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Wtap
Cytoplasm Neuroblastoma cell line (N2A)     22406755
Exosome Mast cells     17486113

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m21-1
Interactor2: Wtap

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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