Basic Information:

  VIRBase ID:  

VHID00597090

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m21-1:  MIMAT0005540          Fnbp4:  NM_018828     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m21-1	Fnbp4
miRBase Accession/Entrez ID	MIMAT0005540	55935
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	FBP3//FBP30//Fnbp30//mKIAA1014

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Fnbp4	chr2:90613430(+) A-I      intronic chr2:90613385(+) A-I      intronic chr2:90613436(+) A-I      intronic chr2:90618934(+) A-I      intronic chr2:90613411(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Fnbp4	chr2:90773228(+) A-I intron -    22524474 chr2:90773254(+) A-I intron -    22524474 chr2:90773273(+) A-I intron -    22524474 chr2:90773279(+) A-I intron -    22524474 chr2:90778777(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Fnbp4	chr2:90745811-90745812(+) m6A CDS//exon       25412662 chr2:90746699-90746700(+) m6A CDS//exon       25412662 chr2:90752860-90752861(+) m6A CDS//exon       24981863 chr2:90752884-90752885(+) m6A CDS//exon       24981863 chr2:90752892-90752893(+) m6A CDS//exon       24981863 chr2:90753159-90753160(+) m6A CDS//exon       24981863 chr2:90757494-90757495(+) m6A CDS//exon       25683224//25412662//24981863 chr2:90757503-90757504(+) m6A CDS//exon       25683224//25412662//24981863 chr2:90757573-90757574(+) m6A CDS//exon       25683224//25412662//24981863 chr2:90757648-90757649(+) m6A CDS//exon       25683224//25412662//24981863 chr2:90758470-90758471(+) m6A CDS//exon       25412662 chr2:90767481-90767482(+) m6A CDS//exon       24981863 chr2:90767490-90767491(+) m6A CDS//exon       24981863 chr2:90767537-90767538(+) m6A CDS//exon       25683224//24981863 chr2:90767587-90767588(+) m6A exon//intron       25683224//24981863 chr2:90767635-90767636(+) m6A exon//intron       25683224//24981863 chr2:90767709-90767710(+) m6A exon//intron       25569111 chr2:90768211-90768212(+) m6A exon//intron       24981863 chr2:90768240-90768241(+) m6A exon//intron       24981863 chr2:90768245-90768246(+) m6A exon//intron       24981863 chr2:90768254-90768255(+) m6A exon//intron       24981863 chr2:90775972-90775973(+) m6A CDS//exon       24981863 chr2:90776164-90776165(+) m6A CDS//exon       25412662 chr2:90776174-90776175(+) m6A CDS//exon       25412662 chr2:90777788-90777789(+) m6A CDS       25412662//24981863 chr2:90777814-90777815(+) m6A CDS       25412662//24981863 chr2:90779213-90779214(+) m6A CDS       24981863 chr2:90779298-90779299(+) m6A CDS       24981863 chr2:90779338-90779339(+) m6A CDS       24981863 chr2:90779617-90779618(+) m6A CDS       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Fnbp4	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m21-1
Interactor2: Fnbp4

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar